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中国产NDM-1醋酸钙不动杆菌的特性分析及质粒消除

Characterization and plasmid elimination of NDM-1-producing Acinetobacter calcoaceticus from China.

作者信息

Sun Yang, Liu Qi, Chen Shuo, Song Yang, Liu Jun, Guo Xuejun, Zhu Lingwei, Ji Xue, Xu Lizhi, Zhou Wei, Qian Jun, Feng Shuzhang

机构信息

Institute of Military Veterinary, AMMS, Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun, China.

Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.

出版信息

PLoS One. 2014 Sep 2;9(9):e106555. doi: 10.1371/journal.pone.0106555. eCollection 2014.

Abstract

The presence of multidrug-resistant bacterial pathogens in the environment poses a serious threat to public health. The opportunistic Acinetobacter spp. are among the most prevalent causes of nosocomial infections. Here, we performed complete genome sequencing of the Acinetobacter calcoaceticus strain XM1570, which was originally cultivated from the sputum of a patient diagnosed with pneumonia in Xiamen in 2010. We identified carbapenem resistance associated gene bla(NDM-1) located on a 47.3-kb plasmid. Three methods--natural reproduction, sodium dodecyl sulfate treatment and nalidixic acid treatment--were used to eliminate the bla(NDM-1)-encoding plasmid, which achieved elimination rates of 3.32% (10/301), 83.78% (278/332), and 84.17% (298/354), respectively. Plasmid elimination dramatically increased antibiotic sensitivity, reducing the minimum bacteriostatic concentration of meropenem from 256 µg/ml in the clinical strain to 0.125 µg/ml in the plasmid-eliminated strain. Conjugation transfer assays showed that the bla(NDM-1)-containing plasmid could be transferred into Escherichia coli DH5α:pBR322 in vitro as well as in vivo in mice. The bla(NDM-1) genetic environment was in accordance with that of other bla(NDM-1) genes identified from India, Japan, and Hong-Kong. The multilocus sequence type of the isolate was identified as ST-70. Two novel genes encoding intrinsic OXA and ADC were identified and named as OXA-417 and ADC-72. The finding of bla(NDM-1) in species like A. calcoaceticus demonstrates the wide spread of this gene in gram-negative bacteria which is possible by conjugative plasmid transfer. The results of this study may help in the development of a treatment strategy for controlling NDM-1 bacterial infection and transmission.

摘要

环境中多重耐药细菌病原体的存在对公众健康构成严重威胁。机会致病菌不动杆菌属是医院感染最常见的病因之一。在此,我们对醋酸钙不动杆菌菌株XM1570进行了全基因组测序,该菌株最初于2010年从厦门一名被诊断患有肺炎的患者痰液中培养获得。我们鉴定出位于一个47.3 kb质粒上的碳青霉烯耐药相关基因bla(NDM - 1)。使用了三种方法——自然传代、十二烷基硫酸钠处理和萘啶酸处理——来消除携带bla(NDM - 1)的质粒,其消除率分别为3.32%(10/301)、83.78%(278/332)和84.17%(298/354)。质粒消除显著提高了抗生素敏感性,将美罗培南在临床菌株中的最低抑菌浓度从256 μg/ml降低至质粒消除菌株中的0.125 μg/ml。接合转移试验表明,携带bla(NDM - 1)的质粒能够在体外以及在小鼠体内转移到大肠杆菌DH5α:pBR322中。bla(NDM - 1)的基因环境与从印度、日本和香港鉴定出的其他bla(NDM - 1)基因一致。该分离株的多位点序列类型被鉴定为ST - 70。鉴定出两个编码固有OXA和ADC的新基因,并将其命名为OXA - 417和ADC - 72。在醋酸钙不动杆菌等物种中发现bla(NDM - 1)表明该基因通过接合性质粒转移在革兰氏阴性菌中广泛传播。本研究结果可能有助于制定控制NDM - 1细菌感染和传播的治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ca6/4152304/aaddcc84aa82/pone.0106555.g001.jpg

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