Alicea Bradly, Gordon Richard
Orthogonal Research, Champaign, IL 61821, USA.
C.S. Mott Center for Human Growth and Development, Department of Obstetrics & Gynecology, Wayne State University, Detroit, MI 48201, USA; Embryogenesis Center, Gulf Specimen Marine Laboratory, Panacea, FL 32346, USA.
Biosystems. 2014 Sep;123:54-66. doi: 10.1016/j.biosystems.2014.09.007. Epub 2014 Sep 16.
Many models have been used to simplify and operationalize the subtle but complex mechanisms of biological evolution. Toy models are gross simplifications that nevertheless attempt to retain major essential features of evolution, bridging the gap between empirical reality and formal theoretical understanding. In this paper, we examine thirteen models which describe evolution that also qualify as such toy models, including the tree of life, branching processes, adaptive ratchets, fitness landscapes, and the role of nonlinear avalanches in evolutionary dynamics. Such toy models are intended to capture features such as evolutionary trends, coupled evolutionary dynamics of phenotype and genotype, adaptive change, branching, and evolutionary transience. The models discussed herein are applied to specific evolutionary contexts in various ways that simplify the complexity inherent in evolving populations. While toy models are overly simplistic, they also provide sufficient dynamics for capturing the fundamental mechanism(s) of evolution. Toy models might also be used to aid in high-throughput data analysis and the understanding of cultural evolutionary trends. This paper should serve as an introductory guide to the toy modeling of evolutionary complexity.
许多模型已被用于简化和实施生物进化中微妙但复杂的机制。玩具模型是极其简化的模型,但仍试图保留进化的主要基本特征,弥合经验现实与形式理论理解之间的差距。在本文中,我们研究了13个描述进化的模型,这些模型也可被视为此类玩具模型,包括生命之树、分支过程、适应性棘轮、适应度景观以及非线性雪崩在进化动力学中的作用。此类玩具模型旨在捕捉诸如进化趋势、表型和基因型的耦合进化动力学、适应性变化、分支以及进化的短暂性等特征。本文所讨论的模型以各种方式应用于特定的进化背景,从而简化了进化种群中固有的复杂性。虽然玩具模型过于简单,但它们也提供了足够的动力学来捕捉进化的基本机制。玩具模型还可用于辅助高通量数据分析以及理解文化进化趋势。本文应作为进化复杂性玩具建模的入门指南。