Suppr超能文献

从哪里开始呢?在全基因组范围内绘制大肠杆菌中的转录起始位点。

Where to begin? Mapping transcription start sites genome-wide in Escherichia coli.

作者信息

Wade Joseph T

机构信息

Wadsworth Center, New York State Department of Health, Albany, New York, USA Department of Biomedical Sciences, University at Albany, Albany, New York, USA

出版信息

J Bacteriol. 2015 Jan 1;197(1):4-6. doi: 10.1128/JB.02410-14. Epub 2014 Oct 20.

Abstract

Recent genome-wide studies of bacterial transcription have revealed large numbers of promoters located inside genes. In this issue of the Journal of Bacteriology, Thomason and colleagues (J. Bacteriol. 197:18-28, 2015, doi:10.1128/JB.02096-14) map transcription start sites in Escherichia coli on an unprecedented scale. This work provides important insights into the regulation of transcripts that initiate inside genes and sources of variability between studies aimed at identifying these RNAs.

摘要

近期对细菌转录的全基因组研究发现了大量位于基因内部的启动子。在本期《细菌学杂志》中,托马森及其同事(《细菌学杂志》197:18 - 28, 2015, doi:10.1128/JB.02096 - 14)以前所未有的规模绘制了大肠杆菌中的转录起始位点。这项工作为基因内部起始的转录本调控以及旨在鉴定这些RNA的研究之间的变异性来源提供了重要见解。

相似文献

1
Where to begin? Mapping transcription start sites genome-wide in Escherichia coli.
J Bacteriol. 2015 Jan 1;197(1):4-6. doi: 10.1128/JB.02410-14. Epub 2014 Oct 20.
3
Antisense transcription is pervasive but rarely conserved in enteric bacteria.
mBio. 2012 Aug 7;3(4). doi: 10.1128/mBio.00156-12. Print 2012.
5
Transcription start site associated RNAs in bacteria.
Mol Syst Biol. 2012 May 22;8:585. doi: 10.1038/msb.2012.16.
6
U-turns and regulatory RNAs.
Curr Opin Microbiol. 2000 Apr;3(2):159-64. doi: 10.1016/s1369-5274(00)00069-2.
7
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts.
Nucleic Acids Res. 2010 Jun;38(11):3794-808. doi: 10.1093/nar/gkq032. Epub 2010 Mar 26.
8
Small RNAs Repress Expression of Polysaccharide Utilization Loci of Gut Bacteroides Species.
J Bacteriol. 2016 Aug 25;198(18):2396-8. doi: 10.1128/JB.00514-16. Print 2016 Sep 15.
9

引用本文的文献

1
Analysis of promoter region and regulatory elements of Rhizobium giardinii DNA-binding response regulator A3AY_RS01 genes.
J Genet Eng Biotechnol. 2024 Sep;22(3):100397. doi: 10.1016/j.jgeb.2024.100397. Epub 2024 Jun 20.
2
Cross-species RNA-seq for deciphering host-microbe interactions.
Nat Rev Genet. 2021 Jun;22(6):361-378. doi: 10.1038/s41576-021-00326-y. Epub 2021 Feb 17.
3
Regulation of Bottromycin Biosynthesis Involves an Internal Transcriptional Start Site and a Cluster-Situated Modulator.
Front Microbiol. 2020 Mar 26;11:495. doi: 10.3389/fmicb.2020.00495. eCollection 2020.
4
Technique Development for Probing RNA Structure In Vivo and Genome-Wide.
Cold Spring Harb Perspect Biol. 2018 Oct 1;10(10):a032250. doi: 10.1101/cshperspect.a032250.
5
Genome-wide relationship between R-loop formation and antisense transcription in Escherichia coli.
Nucleic Acids Res. 2018 Apr 20;46(7):3400-3411. doi: 10.1093/nar/gky118.
7
Reconstruction of Transcription Control Networks in Mollicutes by High-Throughput Identification of Promoters.
Front Microbiol. 2016 Dec 6;7:1977. doi: 10.3389/fmicb.2016.01977. eCollection 2016.

本文引用的文献

1
Pervasive transcription: detecting functional RNAs in bacteria.
Transcription. 2014;5(4):e944039. doi: 10.4161/21541272.2014.944039. Epub 2014 Oct 30.
3
Pervasive transcription: illuminating the dark matter of bacterial transcriptomes.
Nat Rev Microbiol. 2014 Sep;12(9):647-53. doi: 10.1038/nrmicro3316. Epub 2014 Jul 28.
5
Conservation of transcription start sites within genes across a bacterial genus.
mBio. 2014 Jul 1;5(4):e01398-14. doi: 10.1128/mBio.01398-14.
6
Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation.
RNA Biol. 2014;11(5):641-54. doi: 10.4161/rna.29299. Epub 2014 Jun 12.
7
The double-stranded transcriptome of Escherichia coli.
Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3134-9. doi: 10.1073/pnas.1315974111. Epub 2014 Jan 22.
8
Widespread suppression of intragenic transcription initiation by H-NS.
Genes Dev. 2014 Feb 1;28(3):214-9. doi: 10.1101/gad.234336.113. Epub 2014 Jan 21.
9
Rho and NusG suppress pervasive antisense transcription in Escherichia coli.
Genes Dev. 2012 Dec 1;26(23):2621-33. doi: 10.1101/gad.196741.112.
10
Antisense transcription is pervasive but rarely conserved in enteric bacteria.
mBio. 2012 Aug 7;3(4). doi: 10.1128/mBio.00156-12. Print 2012.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验