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从阿根廷亚南极比格尔海峡分离出的属于γ-变形菌纲的嗜冷和耐冷海洋细菌的系统发育和酶学特性

Phylogenentic and enzymatic characterization of psychrophilic and psychrotolerant marine bacteria belong to γ-Proteobacteria group isolated from the sub-Antarctic Beagle Channel, Argentina.

作者信息

Cristóbal Héctor A, Benito Juliana, Lovrich Gustavo A, Abate Carlos M

机构信息

Planta Piloto de Procesos Industriales y Microbiológicos (PROIMI-CONICET), Av. Belgrano y Pasaje Caseros, 4000, Tucumán, Argentina,

出版信息

Folia Microbiol (Praha). 2015 May;60(3):183-98. doi: 10.1007/s12223-014-0351-1. Epub 2014 Oct 26.

Abstract

The phylogenetic and physiological characteristics of cultivable-dependent approaches were determined to establish the diversity of marine bacteria associated with the intestines of benthonic organisms and seawater samples from the Argentina's Beagle Channel. A total of 737 isolates were classified as psychrophlic and psychrotolerant culturable marine bacteria. These cold-adapted microorganisms are capable of producing cold-active glycosyl hydrolases, such as β-glucosidases, celulases, β-galactosidases, xylanases, chitinases, and proteases. These enzymes could have potential biotechnological applications for use in low-temperature manufacturing processes. According to polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S ribosomal DNA (ARDRA) and DNA gyrase subunit B (gyrB-RFLP), 11 operational taxonomic units (OTU) were identified and clustered in known genera using InfoStat software. The 50 isolates selected were sequenced based on near full sequence analysis of 16S rDNA and gyrB sequences and identified by their nearest neighbors ranging between 96 and 99 % of identities. Phylogenetic analyses using both genes allowed relationships between members of the cultured marine bacteria belonging to the γ-Proteobacteria group (Aeromonas, Halteromonas, Pseudomonas, Pseudoalteromonas, Shewanella, Serratia, Colwellia, Glacielocola, and Psychrobacter) to be evaluated. Our research reveals a high diversity of hydrolytic bacteria, and their products actuality has an industrial use in several bioprocesses at low-temperature manufacturing.

摘要

为确定与阿根廷比格尔海峡底栖生物肠道及海水样本相关的海洋细菌多样性,对可培养方法的系统发育和生理特征进行了研究。共737株分离菌被归类为嗜冷和耐冷可培养海洋细菌。这些适应寒冷的微生物能够产生冷活性糖基水解酶,如β-葡萄糖苷酶、纤维素酶、β-半乳糖苷酶、木聚糖酶、几丁质酶和蛋白酶。这些酶在低温制造工艺中可能具有潜在的生物技术应用价值。根据对编码16S核糖体DNA的部分基因(ARDRA)和DNA促旋酶亚基B(gyrB-RFLP)的聚合酶链反应-限制性片段长度多态性分析,使用InfoStat软件鉴定出11个操作分类单元(OTU)并聚类到已知属中。基于16S rDNA和gyrB序列的近全序列分析对所选的50株分离菌进行测序,并通过其最近邻的96%至99%的同一性进行鉴定。使用这两个基因进行的系统发育分析能够评估属于γ-变形菌纲(气单胞菌属、盐单胞菌属、假单胞菌属、交替假单胞菌属、希瓦氏菌属、沙雷氏菌属、科尔韦氏菌属、嗜冷栖居菌属和嗜冷杆菌属)的培养海洋细菌成员之间的关系。我们的研究揭示了水解细菌的高度多样性,并且它们的产物在低温制造的多个生物过程中具有工业用途。

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