Suppr超能文献

解旋酶UvrD:老骥伏枥,新技在身:如何以退为进,大步向前。

UvrD helicase: an old dog with a new trick: how one step backward leads to many steps forward.

作者信息

Epshtein Vitaliy

机构信息

Department of Biochemistry, New York University, Langhorn Medical Center, New York, NY, USA.

出版信息

Bioessays. 2015 Jan;37(1):12-9. doi: 10.1002/bies.201400106. Epub 2014 Oct 27.

Abstract

Transcription-coupled repair (TCR) is a phenomenon that exists in a wide variety of organisms from bacteria to humans. This mechanism allows cells to repair the actively transcribed DNA strand much faster than the non-transcribed one. At the sites of bulky DNA damage RNA polymerase stalls, initiating recruitment of the repair machinery. It is a commonly accepted paradigm that bacterial cells utilize a sole coupling factor, called Mfd to initiate TCR. According to that model, Mfd removes transcription complexes stalled at the lesion site and simultaneously recruits repair machinery. However, this model was recently put in doubt by various discrepancies between the proposed universal role of Mfd in the TCR and its biochemical and phenotypical properties. Here, I present a second pathway of bacterial TCR recently discovered in my laboratory, which does not involve Mfd but implicates a common repair factor, UvrD, in a central position in the process.

摘要

转录偶联修复(TCR)是一种存在于从细菌到人类等多种生物体中的现象。这种机制使细胞能够比未转录的DNA链更快地修复正在被积极转录的DNA链。在DNA发生大片段损伤的位点,RNA聚合酶会停滞,从而启动修复机制的募集。细菌细胞利用一种名为Mfd的单一偶联因子来启动TCR,这是一个被广泛接受的范式。根据该模型,Mfd移除在损伤位点停滞的转录复合物,并同时募集修复机制。然而,最近TCR中Mfd的普遍作用与其生化和表型特性之间存在的各种差异对该模型提出了质疑。在此,我介绍我实验室最近发现的细菌TCR的第二条途径,该途径不涉及Mfd,但涉及一种常见的修复因子UvrD,它在这一过程中处于核心地位。

相似文献

1
UvrD helicase: an old dog with a new trick: how one step backward leads to many steps forward.
Bioessays. 2015 Jan;37(1):12-9. doi: 10.1002/bies.201400106. Epub 2014 Oct 27.
2
Comparing Mfd- and UvrD-dependent models of transcription coupled DNA repair in live Escherichia coli using single-molecule tracking.
DNA Repair (Amst). 2024 May;137:103665. doi: 10.1016/j.dnarep.2024.103665. Epub 2024 Mar 7.
3
Involvement of transcription-coupled repair factor Mfd and DNA helicase UvrD in mutational processes in Pseudomonas putida.
DNA Repair (Amst). 2018 Dec;72:18-27. doi: 10.1016/j.dnarep.2018.09.011. Epub 2018 Sep 26.
4
Mfd translocase is necessary and sufficient for transcription-coupled repair in .
J Biol Chem. 2017 Nov 10;292(45):18386-18391. doi: 10.1074/jbc.C117.818807. Epub 2017 Oct 6.
5
Crucial role and mechanism of transcription-coupled DNA repair in bacteria.
Nature. 2022 Apr;604(7904):152-159. doi: 10.1038/s41586-022-04530-6. Epub 2022 Mar 30.
6
Regulation and rate enhancement during transcription-coupled DNA repair.
Mol Cell. 2010 Dec 10;40(5):714-24. doi: 10.1016/j.molcel.2010.11.012.
7
Transcription-Coupled Repair: From Cells to Single Molecules and Back Again.
J Mol Biol. 2019 Sep 20;431(20):4093-4102. doi: 10.1016/j.jmb.2019.05.040. Epub 2019 Jun 6.
8
UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain.
Commun Biol. 2020 Oct 23;3(1):607. doi: 10.1038/s42003-020-01332-2.
9
Genome-wide transcription-coupled repair in is mediated by the Mfd translocase.
Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2116-E2125. doi: 10.1073/pnas.1700230114. Epub 2017 Feb 6.
10
Helicases required for nucleotide excision repair: structure, function and mechanism.
Enzymes. 2023;54:273-304. doi: 10.1016/bs.enz.2023.05.002. Epub 2023 Jun 3.

引用本文的文献

1
PcrA Dissociates RecA Filaments and the SsbA and RecO Mediators Counterbalance Such Activity.
Front Mol Biosci. 2022 Feb 9;9:836211. doi: 10.3389/fmolb.2022.836211. eCollection 2022.
2
Combined Methylome, Transcriptome and Proteome Analyses Document Rapid Acclimatization of a Bacterium to Environmental Changes.
Front Microbiol. 2020 Sep 15;11:544785. doi: 10.3389/fmicb.2020.544785. eCollection 2020.
3
Formation and Recognition of UV-Induced DNA Damage within Genome Complexity.
Int J Mol Sci. 2020 Sep 12;21(18):6689. doi: 10.3390/ijms21186689.
4
PcrA Couples DNA Replication, Transcription, Recombination and Segregation.
Front Mol Biosci. 2020 Jul 21;7:140. doi: 10.3389/fmolb.2020.00140. eCollection 2020.
5
Phylogenomics of Cas4 family nucleases.
BMC Evol Biol. 2017 Nov 28;17(1):232. doi: 10.1186/s12862-017-1081-1.
6
Mechanistic insights into transcription coupled DNA repair.
DNA Repair (Amst). 2017 Aug;56:42-50. doi: 10.1016/j.dnarep.2017.06.006. Epub 2017 Jun 9.
8
The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase.
Nucleic Acids Res. 2017 Apr 20;45(7):3875-3887. doi: 10.1093/nar/gkx074.
9
A Magic Spot in Genome Maintenance.
Trends Genet. 2017 Jan;33(1):58-67. doi: 10.1016/j.tig.2016.11.002. Epub 2016 Dec 5.

本文引用的文献

1
Stopped in its tracks: the RNA polymerase molecular motor as a robust sensor of DNA damage.
DNA Repair (Amst). 2014 Aug;20:49-57. doi: 10.1016/j.dnarep.2014.02.018. Epub 2014 Mar 28.
2
UvrD facilitates DNA repair by pulling RNA polymerase backwards.
Nature. 2014 Jan 16;505(7483):372-7. doi: 10.1038/nature12928. Epub 2014 Jan 8.
3
Dealing with pervasive transcription.
Mol Cell. 2013 Nov 21;52(4):473-84. doi: 10.1016/j.molcel.2013.10.032.
5
Prokaryotic nucleotide excision repair.
Cold Spring Harb Perspect Biol. 2013 Mar 1;5(3):a012591. doi: 10.1101/cshperspect.a012591.
6
Antisense transcription is pervasive but rarely conserved in enteric bacteria.
mBio. 2012 Aug 7;3(4). doi: 10.1128/mBio.00156-12. Print 2012.
7
Transcription-coupled DNA repair in prokaryotes.
Prog Mol Biol Transl Sci. 2012;110:25-40. doi: 10.1016/B978-0-12-387665-2.00002-X.
8
TFIIH: when transcription met DNA repair.
Nat Rev Mol Cell Biol. 2012 May 10;13(6):343-54. doi: 10.1038/nrm3350.
10
Linking RNA polymerase backtracking to genome instability in E. coli.
Cell. 2011 Aug 19;146(4):533-43. doi: 10.1016/j.cell.2011.07.034.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验