Suppr超能文献

对氨基载体蛋白介导的赖氨酸生物合成的结构洞察:嗜热栖热菌中LysZ·LysW复合物的晶体结构

Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ·LysW complex from Thermus thermophilus.

作者信息

Yoshida Ayako, Tomita Takeo, Fujimura Tsutomu, Nishiyama Chiharu, Kuzuyama Tomohisa, Nishiyama Makoto

机构信息

From the Biotechnology Research Center, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657.

the Division of Biochemical Analysis, Central Laboratory of Medical Sciences, Juntendo University School of Medicine, 2-1-1 Hongo, Bunkyo-ku, Tokyo 113-8421, and.

出版信息

J Biol Chem. 2015 Jan 2;290(1):435-47. doi: 10.1074/jbc.M114.595983. Epub 2014 Nov 12.

Abstract

In the biosynthesis of lysine by Thermus thermophilus, the metabolite α-ketoglutarate is converted to the intermediate α-aminoadipate (AAA), which is protected by the 54-amino acid acidic protein LysW. In this study, we determined the crystal structure of LysZ from T. thermophilus (TtLysZ), an amino acid kinase that catalyzes the second step in the AAA to lysine conversion, which was in a complex with LysW at a resolution of 1.85 Å. A crystal analysis coupled with isothermal titration calorimetry of the TtLysZ mutants for TtLysW revealed tight interactions between LysZ and the globular and C-terminal extension domains of the LysW protein, which were mainly attributed to electrostatic forces. These results provided structural evidence for LysW acting as a protecting molecule for the α-amino group of AAA and also as a carrier protein to guarantee better recognition by biosynthetic enzymes for the efficient biosynthesis of lysine.

摘要

在嗜热栖热菌赖氨酸的生物合成过程中,代谢物α-酮戊二酸转化为中间体α-氨基己二酸(AAA),其由54个氨基酸的酸性蛋白LysW保护。在本研究中,我们确定了嗜热栖热菌LysZ(TtLysZ)的晶体结构,TtLysZ是一种氨基酸激酶,催化AAA向赖氨酸转化的第二步,其与LysW形成复合物,分辨率为1.85 Å。对TtLysZ突变体与TtLysW进行晶体分析并结合等温滴定量热法,揭示了LysZ与LysW蛋白的球状结构域和C末端延伸结构域之间存在紧密相互作用,这主要归因于静电力。这些结果为LysW作为AAAα-氨基的保护分子以及作为载体蛋白以确保生物合成酶更好地识别从而高效合成赖氨酸提供了结构证据。

相似文献

3
Crystal Structure of the LysY·LysW Complex from Thermus thermophilus.
J Biol Chem. 2016 May 6;291(19):9948-59. doi: 10.1074/jbc.M115.707034. Epub 2016 Mar 9.
4
Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.
Nat Chem Biol. 2009 Sep;5(9):673-9. doi: 10.1038/nchembio.198. Epub 2009 Jul 20.
5
Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.
Nat Chem Biol. 2013 Apr;9(4):277-83. doi: 10.1038/nchembio.1200. Epub 2013 Feb 24.
6
Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus.
J Biol Chem. 2010 Feb 5;285(6):4195-4205. doi: 10.1074/jbc.M109.086330. Epub 2009 Dec 7.
7
Protein-protein interaction-mediated regulation of lysine biosynthesis of Thermus thermophilus through the function-unknown protein LysV.
J Gen Appl Microbiol. 2023 Nov 15;69(2):91-101. doi: 10.2323/jgam.2023.06.003. Epub 2023 Jun 26.
8
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8.
J Mol Biol. 2003 Sep 19;332(3):729-40. doi: 10.1016/s0022-2836(03)00946-x.
10
Lysine is synthesized through the alpha-aminoadipate pathway in Thermus thermophilus.
FEMS Microbiol Lett. 1998 Dec 15;169(2):361-7. doi: 10.1111/j.1574-6968.1998.tb13341.x.

引用本文的文献

3
Biosynthesis of 3-thia-α-amino acids on a carrier peptide.
Proc Natl Acad Sci U S A. 2022 Jul 19;119(29):e2205285119. doi: 10.1073/pnas.2205285119. Epub 2022 Jul 5.
4
Open Issues for Protein Function Assignment in and Other Halophilic Archaea.
Genes (Basel). 2021 Jun 24;12(7):963. doi: 10.3390/genes12070963.
5
Heterologous gene expression and characterization of two serine hydroxymethyltransferases from Thermoplasma acidophilum.
Extremophiles. 2021 Jul;25(4):393-402. doi: 10.1007/s00792-021-01238-9. Epub 2021 Jul 1.
6
Amino-group carrier-protein-mediated secondary metabolite biosynthesis in Streptomyces.
Nat Chem Biol. 2016 Nov;12(11):967-972. doi: 10.1038/nchembio.2181. Epub 2016 Sep 26.
7
Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System.
J Biol Chem. 2016 Oct 7;291(41):21630-21643. doi: 10.1074/jbc.M116.743021. Epub 2016 Aug 26.
8
Crystal Structure of the LysY·LysW Complex from Thermus thermophilus.
J Biol Chem. 2016 May 6;291(19):9948-59. doi: 10.1074/jbc.M115.707034. Epub 2016 Mar 9.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Structure of soybean serine acetyltransferase and formation of the cysteine regulatory complex as a molecular chaperone.
J Biol Chem. 2013 Dec 20;288(51):36463-72. doi: 10.1074/jbc.M113.527143. Epub 2013 Nov 13.
3
Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.
Nat Chem Biol. 2013 Apr;9(4):277-83. doi: 10.1038/nchembio.1200. Epub 2013 Feb 24.
4
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.
PLoS Comput Biol. 2012;8(10):e1002708. doi: 10.1371/journal.pcbi.1002708. Epub 2012 Oct 18.
5
The structure of putative N-acetyl glutamate kinase from Thermus thermophilus reveals an intermediate active site conformation of the enzyme.
Biochem Biophys Res Commun. 2012 Apr 13;420(3):692-7. doi: 10.1016/j.bbrc.2012.03.072. Epub 2012 Mar 20.
6
Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.
Nat Chem Biol. 2009 Sep;5(9):673-9. doi: 10.1038/nchembio.198. Epub 2009 Jul 20.
7
Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
8
Assembly of the cysteine synthase complex and the regulatory role of protein-protein interactions.
J Biol Chem. 2009 Apr 10;284(15):10268-75. doi: 10.1074/jbc.M900154200. Epub 2009 Feb 11.
10
Searching protein structure databases with DaliLite v.3.
Bioinformatics. 2008 Dec 1;24(23):2780-1. doi: 10.1093/bioinformatics/btn507. Epub 2008 Sep 25.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验