• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

切片、采样和距离依赖效应会影响模拟皮层回路结构中的网络测量指标。

Slicing, sampling, and distance-dependent effects affect network measures in simulated cortical circuit structures.

作者信息

Miner Daniel C, Triesch Jochen

机构信息

Department of Neuroscience, Frankfurt Institute for Advanced Studies Frankfurt am Main, Germany.

出版信息

Front Neuroanat. 2014 Nov 5;8:125. doi: 10.3389/fnana.2014.00125. eCollection 2014.

DOI:10.3389/fnana.2014.00125
PMID:25414647
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4220704/
Abstract

The neuroanatomical connectivity of cortical circuits is believed to follow certain rules, the exact origins of which are still poorly understood. In particular, numerous nonrandom features, such as common neighbor clustering, overrepresentation of reciprocal connectivity, and overrepresentation of certain triadic graph motifs have been experimentally observed in cortical slice data. Some of these data, particularly regarding bidirectional connectivity are seemingly contradictory, and the reasons for this are unclear. Here we present a simple static geometric network model with distance-dependent connectivity on a realistic scale that naturally gives rise to certain elements of these observed behaviors, and may provide plausible explanations for some of the conflicting findings. Specifically, investigation of the model shows that experimentally measured nonrandom effects, especially bidirectional connectivity, may depend sensitively on experimental parameters such as slice thickness and sampling area, suggesting potential explanations for the seemingly conflicting experimental results.

摘要

人们认为皮质回路的神经解剖学连接遵循某些规则,但其确切起源仍知之甚少。特别是,在皮质切片数据中通过实验观察到了许多非随机特征,如共同邻居聚类、相互连接的过度呈现以及某些三元图模式的过度呈现。其中一些数据,特别是关于双向连接的数据,似乎相互矛盾,其原因尚不清楚。在这里,我们提出了一个简单的静态几何网络模型,该模型在实际尺度上具有距离依赖性连接,自然地产生了这些观察到的行为的某些元素,并可能为一些相互矛盾的发现提供合理的解释。具体而言,对该模型的研究表明,实验测量的非随机效应,尤其是双向连接,可能敏感地取决于诸如切片厚度和采样面积等实验参数,这为看似相互矛盾的实验结果提供了潜在的解释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/b0c9e87da762/fnana-08-00125-g0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/c13a69ac4f43/fnana-08-00125-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/7ef7fd769c2b/fnana-08-00125-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/8f8bd4320e03/fnana-08-00125-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/9bd47e069835/fnana-08-00125-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/279410a40626/fnana-08-00125-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/589084136be9/fnana-08-00125-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/07701cdf5eb5/fnana-08-00125-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/e9255fc14a14/fnana-08-00125-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/1cfbe893a2c8/fnana-08-00125-g0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/053074095aa9/fnana-08-00125-g0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/b0c9e87da762/fnana-08-00125-g0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/c13a69ac4f43/fnana-08-00125-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/7ef7fd769c2b/fnana-08-00125-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/8f8bd4320e03/fnana-08-00125-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/9bd47e069835/fnana-08-00125-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/279410a40626/fnana-08-00125-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/589084136be9/fnana-08-00125-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/07701cdf5eb5/fnana-08-00125-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/e9255fc14a14/fnana-08-00125-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/1cfbe893a2c8/fnana-08-00125-g0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/053074095aa9/fnana-08-00125-g0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7656/4220704/b0c9e87da762/fnana-08-00125-g0011.jpg

相似文献

1
Slicing, sampling, and distance-dependent effects affect network measures in simulated cortical circuit structures.切片、采样和距离依赖效应会影响模拟皮层回路结构中的网络测量指标。
Front Neuroanat. 2014 Nov 5;8:125. doi: 10.3389/fnana.2014.00125. eCollection 2014.
2
Nonrandom network connectivity comes in pairs.非随机网络连接是成对出现的。
Netw Neurosci. 2017 Feb 1;1(1):31-41. doi: 10.1162/NETN_a_00004. eCollection 2017 Winter.
3
On the Structure of Cortical Microcircuits Inferred from Small Sample Sizes.从小样本推断的皮质微电路结构
J Neurosci. 2017 Aug 30;37(35):8498-8510. doi: 10.1523/JNEUROSCI.0984-17.2017. Epub 2017 Jul 31.
4
Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring.拓扑约束下可塑性驱动的自组织解释了皮质突触连接的非随机特征。
PLoS Comput Biol. 2016 Feb 11;12(2):e1004759. doi: 10.1371/journal.pcbi.1004759. eCollection 2016 Feb.
5
The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model.神经元形态对网络连通性的图论测度的影响:一个两级统计模型的分析
Front Neuroanat. 2015 Jun 10;9:76. doi: 10.3389/fnana.2015.00076. eCollection 2015.
6
Subgraphs and network motifs in geometric networks.几何网络中的子图与网络基序
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Feb;71(2 Pt 2):026117. doi: 10.1103/PhysRevE.71.026117. Epub 2005 Feb 22.
7
Network analysis of functional brain connectivity in borderline personality disorder using resting-state fMRI.使用静息态功能磁共振成像对边缘型人格障碍患者大脑功能连接进行网络分析。
Neuroimage Clin. 2016 Feb 18;11:302-315. doi: 10.1016/j.nicl.2016.02.006. eCollection 2016.
8
Effects of local network topology on the functional reconstruction of spiking neural network models.局部网络拓扑对脉冲神经网络模型功能重建的影响。
Appl Netw Sci. 2017;2(1):22. doi: 10.1007/s41109-017-0044-1. Epub 2017 Jul 18.
9
It's All About the Networks.一切都与网络有关。
Epilepsy Curr. 2019 May-Jun;19(3):165-167. doi: 10.1177/1535759719843301. Epub 2019 Apr 29.
10
Contextual Integration in Cortical and Convolutional Neural Networks.皮层神经网络和卷积神经网络中的上下文整合
Front Comput Neurosci. 2020 Apr 23;14:31. doi: 10.3389/fncom.2020.00031. eCollection 2020.

引用本文的文献

1
Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring.拓扑约束下可塑性驱动的自组织解释了皮质突触连接的非随机特征。
PLoS Comput Biol. 2016 Feb 11;12(2):e1004759. doi: 10.1371/journal.pcbi.1004759. eCollection 2016 Feb.
2
Editorial: Quantitative Analysis of Neuroanatomy.社论:神经解剖学的定量分析
Front Neuroanat. 2015 Nov 11;9:143. doi: 10.3389/fnana.2015.00143. eCollection 2015.
3
The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model.

本文引用的文献

1
Small modifications to network topology can induce stochastic bistable spiking dynamics in a balanced cortical model.对网络拓扑结构进行微小修改可在平衡皮质模型中诱导随机双稳发放动力学。
PLoS One. 2014 Apr 17;9(4):e88254. doi: 10.1371/journal.pone.0088254. eCollection 2014.
2
Computing the size and number of neuronal clusters in local circuits.计算局部回路中神经元簇的大小和数量。
Front Neuroanat. 2013 Feb 19;7:1. doi: 10.3389/fnana.2013.00001. eCollection 2013.
3
Slow dynamics and high variability in balanced cortical networks with clustered connections.
神经元形态对网络连通性的图论测度的影响:一个两级统计模型的分析
Front Neuroanat. 2015 Jun 10;9:76. doi: 10.3389/fnana.2015.00076. eCollection 2015.
具有聚类连接的平衡皮质网络中的慢动力学和高可变性。
Nat Neurosci. 2012 Nov;15(11):1498-505. doi: 10.1038/nn.3220. Epub 2012 Sep 23.
4
Large-scale automated histology in the pursuit of connectomes.大规模自动化组织学在连接组学中的应用。
J Neurosci. 2011 Nov 9;31(45):16125-38. doi: 10.1523/JNEUROSCI.4077-11.2011.
5
Functional specificity of local synaptic connections in neocortical networks.新皮层网络中局部突触连接的功能特异性。
Nature. 2011 May 5;473(7345):87-91. doi: 10.1038/nature09880. Epub 2011 Apr 10.
6
A synaptic organizing principle for cortical neuronal groups.皮层神经元群的突触组织原则。
Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5419-24. doi: 10.1073/pnas.1016051108. Epub 2011 Mar 7.
7
Structural properties of the Caenorhabditis elegans neuronal network.秀丽隐杆线虫神经元网络的结构特性。
PLoS Comput Biol. 2011 Feb 3;7(2):e1001066. doi: 10.1371/journal.pcbi.1001066.
8
A modeler's view on the spatial structure of intrinsic horizontal connectivity in the neocortex.关于新皮层内固有水平连接的空间结构的建模者观点。
Prog Neurobiol. 2010 Nov;92(3):277-92. doi: 10.1016/j.pneurobio.2010.05.001. Epub 2010 Jun 4.
9
Models of cortical networks with long-range patchy projections.具有长程斑块状投射的皮质网络模型。
J Comput Neurosci. 2010 Feb;28(1):137-54. doi: 10.1007/s10827-009-0193-z. Epub 2009 Oct 29.
10
Complex network measures of brain connectivity: uses and interpretations.脑连接复杂网络度量:用途与解读。
Neuroimage. 2010 Sep;52(3):1059-69. doi: 10.1016/j.neuroimage.2009.10.003. Epub 2009 Oct 9.