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使用机理模型COSMOmic预测离子有机化学品的磷脂-水分配系数

Prediction of Phospholipid-Water Partition Coefficients of Ionic Organic Chemicals Using the Mechanistic Model COSMOmic.

作者信息

Bittermann Kai, Spycher Simon, Endo Satoshi, Pohler Larissa, Huniar Uwe, Goss Kai-Uwe, Klamt Andreas

机构信息

UFZ - Helmholtz Centre for Environmental Research, Permoserstr. 15, D-04318 Leipzig, Germany.

Ecotoxicology Group, Swiss Federal Research Station (Agroscope) , Schloss 1, CH-8820 Wädenswil, Switzerland.

出版信息

J Phys Chem B. 2014 Dec 26;118(51):14833-42. doi: 10.1021/jp509348a. Epub 2014 Dec 12.

DOI:10.1021/jp509348a
PMID:25459490
Abstract

The partition coefficient of chemicals from water to phospholipid membrane, K(lipw), is of central importance for various fields. For neutral organic molecules, log K(lipw) correlates with the log of bulk solvent-water partition coefficients such as the octanol-water partition coefficient. However, this is not the case for charged compounds, for which a mechanistic modeling approach is highly necessary. In this work, we extend the model COSMOmic, which adapts the COSMO-RS theory for anisotropic phases and has been shown to reliably predict K(lipw) for neutral compounds, to the use of ionic compounds. To make the COSMOmic model applicable for ionic solutes, we implemented the internal membrane dipole potential in COSMOmic. We empirically optimized the potential with experimental K(lipw) data of 161 neutral and 75 ionic compounds, yielding potential shapes that agree well with experimentally determined potentials from the literature. This model refinement has no negative effect on the prediction accuracy of neutral compounds (root-mean-square error, RMSE = 0.62 log units), while it highly improves the prediction of ions (RMSE = 0.70 log units). The refined COSMOmic is, to our knowledge, the first mechanistic model that predicts K(lipw) of both ionic and neutral species with accuracies better than 1 log unit.

摘要

化学物质从水到磷脂膜的分配系数K(lipw)在各个领域都至关重要。对于中性有机分子,log K(lipw)与诸如辛醇 - 水分配系数等本体溶剂 - 水分配系数的对数相关。然而,对于带电化合物并非如此,因此非常有必要采用机理建模方法。在这项工作中,我们将COSMOmic模型进行了扩展,该模型将COSMO - RS理论应用于各向异性相,并且已被证明能够可靠地预测中性化合物的K(lipw),现在扩展到可用于离子化合物。为使COSMOmic模型适用于离子溶质,我们在COSMOmic中实现了内膜偶极子电势。我们利用161种中性和75种离子化合物的实验K(lipw)数据对电势进行了经验优化,得到的电势形状与文献中实验测定的电势非常吻合。这种模型改进对中性化合物的预测准确性没有负面影响(均方根误差,RMSE = 0.62对数单位),同时极大地提高了离子的预测准确性(RMSE = 0.70对数单位)。据我们所知,改进后的COSMOmic是第一个能够以优于1对数单位的精度预测离子和中性物种K(lipw)的机理模型。

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