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化能依赖型趋化作用的最小代谢模型(†)。

A minimal model for metabolism-dependent chemotaxis in Rhodobacter sphaeroides (†).

机构信息

Department of Life Sciences , Imperial College , London , UK.

出版信息

Interface Focus. 2014 Dec 6;4(6):20140002. doi: 10.1098/rsfs.2014.0002.

DOI:10.1098/rsfs.2014.0002
PMID:25485076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4213441/
Abstract

Chemotaxis is vital cellular movement in response to environmental chemicals. Unlike the canonical chemotactic pathway in Escherichia coli, Rhodobacter sphaeroides has both transmembrane and cytoplasmic sensory clusters, with the latter possibly interacting with essential components in the electron transport system. However, the effect of the cytoplasmic sensor and the mechanism of signal integration from both sensory clusters remain unclear. Based on a minimal model of the chemotaxis pathway in this species, we show that signal integration at the motor level produces realistic chemotactic behaviour in line with experimental observations. Our model also suggests that the core pathway of R. sphaeroides, at least its ancestor, may represent a metabolism-dependent selective stopping strategy, which alone can steer cells to favourable environments. Our results not only clarify the potential roles of the two sensory clusters but also put in question the current definitions of attractants and repellents.

摘要

趋化作用是细胞对环境化学物质做出反应的重要运动方式。不同于大肠杆菌中的经典趋化途径,球形红杆菌既有跨膜感觉簇又有细胞质感觉簇,后者可能与电子传递系统中的基本组成部分相互作用。然而,细胞质传感器的作用以及两个感觉簇的信号整合机制仍不清楚。基于该物种趋化途径的一个最小模型,我们表明,在运动水平上的信号整合产生了与实验观察一致的现实趋化行为。我们的模型还表明,球形红杆菌的核心途径,至少其祖先,可能代表一种依赖代谢的选择性停止策略,该策略本身可以引导细胞向有利的环境移动。我们的研究结果不仅阐明了两个感觉簇的潜在作用,还对当前的趋化剂和抑制剂的定义提出了质疑。

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本文引用的文献

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Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks.组氨酸激酶的分裂使双组分信号网络具有超敏性和双稳定性。
PLoS Comput Biol. 2013;9(3):e1002949. doi: 10.1371/journal.pcbi.1002949. Epub 2013 Mar 7.
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Feedback control architecture and the bacterial chemotaxis network.反馈控制架构与细菌趋化网络。
PLoS Comput Biol. 2011 May;7(5):e1001130. doi: 10.1371/journal.pcbi.1001130. Epub 2011 May 5.
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New motion analysis system for characterization of the chemosensory response kinetics of Rhodobacter sphaeroides under different growth conditions.用于表征不同生长条件下球形红杆菌化学感应反应动力学的新型运动分析系统。
Appl Environ Microbiol. 2011 Jun;77(12):4082-8. doi: 10.1128/AEM.00341-11. Epub 2011 Apr 22.
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Signal processing in complex chemotaxis pathways.复杂趋化信号通路中的信号处理。
Nat Rev Microbiol. 2011 Mar;9(3):153-65. doi: 10.1038/nrmicro2505. Epub 2011 Feb 1.
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A minimal model of metabolism-based chemotaxis.基于代谢的趋化作用的最小模型。
PLoS Comput Biol. 2010 Dec 2;6(12):e1001004. doi: 10.1371/journal.pcbi.1001004.
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Diffusion-based and long-range concentration gradients of multiple chemicals for bacterial chemotaxis assays.基于扩散的和长程浓度梯度的多种化学物质用于细菌趋化性测定。
Anal Chem. 2010 Nov 15;82(22):9401-9. doi: 10.1021/ac102022q. Epub 2010 Oct 27.
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Modeling chemotaxis reveals the role of reversed phosphotransfer and a bi-functional kinase-phosphatase.建模化学趋性揭示了反向磷酸转移和双功能激酶-磷酸酶的作用。
PLoS Comput Biol. 2010 Aug 19;6(8):e1000896. doi: 10.1371/journal.pcbi.1000896.
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Coupling metabolism and chemotaxis-dependent behaviours by energy taxis receptors.通过能荷受体耦合代谢和趋化依赖行为。
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9
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10
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Arch Microbiol. 2010 Jul;192(7):507-20. doi: 10.1007/s00203-010-0575-7. Epub 2010 Apr 22.