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白色念珠菌临床分离株中ERG11依赖性唑类耐药异质性表型的结构基础

Structural basis for heterogeneous phenotype of ERG11 dependent Azole resistance in C.albicans clinical isolates.

作者信息

Debnath Surajit, Addya Soma

机构信息

Department of Medical Laboratory Technology, Women's Polytechnic, Hapania, Tripura (W) India.

Government of West Bengal, Paschim Medinipur, West Bengal, India.

出版信息

Springerplus. 2014 Nov 6;3:660. doi: 10.1186/2193-1801-3-660. eCollection 2014.

Abstract

Correlating antifungal Azole drug resistance and mis-sense mutations of ERG11 has been paradoxical in pathogenic yeast Candida albicans. Amino acid substitutions (single or multiple) are frequent on ERG11, a membrane bound enzyme of Ergosterol biosynthesis pathway. Presence or absence of mutations can not sufficiently predict susceptibility. To analyze role of mis-sense mutations on Azole resistance energetically optimized, structurally validated homology model of wild C.albicans ERG11 using eukaryotic template was generated. A Composite Search Approach is proposed to identify vital residues for interaction at 3D active site. Structural analysis of catalytic groove, dynamics of substrate access channels and proximity of Heme prosthetic group characterized ERG11 active site. Several mis-sense mutations of ERG11 reported in C.albicans clinical isolates were selected through a stringent criterion and modeled. ERG11 mutants subsequently subjected to a four tier comparative biophysical analysis. This study indicates (i) critical interactions occur with residues at anterior part of 3D catalytic groove and substitution of these vital residues alters local geometry causing considerable change in catalytic pocket dimension. (ii) Substitutions of vital residues lead to confirmed resistance in clinical isolates that may be resultant to changed geometry of catalytic pocket. (iii)These substitutions also impart significant energetic changes on C.albicans ERG11 and (iv) include detectable dynamic fluctuations on the mutants. (v)Mis-sense mutations on the vital residues of the active site and at the vicinity of Heme prosthetic group are less frequent compared to rest of the enzyme. This large scale mutational study can aid to characterize the mutants in clinical isolates.

摘要

在致病性酵母白色念珠菌中,抗真菌唑类药物耐药性与ERG11的错义突变之间的关联一直存在矛盾。ERG11是麦角固醇生物合成途径中的一种膜结合酶,其上经常出现氨基酸替换(单个或多个)。突变的存在与否并不能充分预测药敏性。为了分析错义突变对唑类耐药性的作用,我们使用真核模板生成了经过能量优化、结构验证的白色念珠菌野生型ERG11同源模型。我们提出了一种复合搜索方法来识别三维活性位点相互作用的关键残基。通过对催化凹槽的结构分析、底物通道的动力学以及血红素辅基的接近程度来表征ERG11活性位点。通过严格标准从白色念珠菌临床分离株中选择了几个报道的ERG11错义突变并进行建模。随后对ERG11突变体进行了四级比较生物物理分析。这项研究表明:(i)关键相互作用发生在三维催化凹槽前部的残基上,这些关键残基的替换会改变局部几何形状,导致催化口袋尺寸发生显著变化。(ii)关键残基的替换导致临床分离株出现确定的耐药性,这可能是催化口袋几何形状改变的结果。(iii)这些替换也给白色念珠菌ERG11带来了显著的能量变化,(iv)包括突变体上可检测到的动态波动。(v)与酶的其他部分相比,活性位点关键残基和血红素辅基附近的错义突变较少。这项大规模突变研究有助于表征临床分离株中的突变体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/798b/4237678/177c8840ae54/40064_2014_1366_Fig1_HTML.jpg

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