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针对金黄色葡萄球菌FtsZ蛋白的潜在抑制剂的虚拟筛选。

Virtual screening of potential inhibitor against FtsZ protein from Staphylococcus aureus.

作者信息

Vijayalakshmi Periyasamy, Nisha Jaganathan, Rajalakshmi Manikkam

机构信息

Bioinformatics centre (BIF), PG& Research Department of Biotechnology & Bioinformatics, Holy Cross College (Autonomous), Tiruchirapalli, 620002, Tamil Nadu, India.

出版信息

Interdiscip Sci. 2014 Dec;6(4):331-9. doi: 10.1007/s12539-012-0229-3. Epub 2014 Nov 6.

Abstract

The gram-positive bacterium Staphylococcus aureus, responsible for a wide variety of diseases in human involve all organ systems ranging from localized skin infections to life-threatening systemic infections. FtsZ, the key protein of bacterial cell division was selected as a potent anti bacterial target. In order to identify the new compounds structure based screening process was carried out. An enrichment study was performed to select a suitable scoring function and to retrieve potential candidates against FtsZ from a large chemical database. The docking score and docking energy values were compared and their atomic interaction was also evaluated. Furthermore molecular dynamics simulation were also been performed to check the stability and the amino acids interacted towards the FtsZ. Finally we selected C ID 16284, 25916, 15894, 13403 as better lead compounds. From these results, we conclude that our insilico results will provide a framework for the detailed in vitro and in vivo studies about the FtsZ protein activity in drug development process.

摘要

革兰氏阳性菌金黄色葡萄球菌可导致人类多种疾病,累及所有器官系统,从局部皮肤感染到危及生命的全身感染。细菌细胞分裂的关键蛋白FtsZ被选为有效的抗菌靶点。为了鉴定新化合物,开展了基于结构的筛选过程。进行了富集研究,以选择合适的评分函数,并从大型化学数据库中检索针对FtsZ的潜在候选物。比较了对接分数和对接能量值,并评估了它们的原子相互作用。此外,还进行了分子动力学模拟,以检查稳定性以及与FtsZ相互作用的氨基酸。最后,我们选择了C ID 16284、25916、15894、13403作为更好的先导化合物。从这些结果中,我们得出结论,我们的计算机模拟结果将为药物开发过程中关于FtsZ蛋白活性的详细体外和体内研究提供一个框架。

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