新型蜡样芽孢杆菌tsu1菌株的基因组序列草图
Draft Genome Sequence of New Bacillus cereus Strain tsu1.
作者信息
Li Hui, Zhou Suping, Johnson Terrance, Vercruysse Koen, Ropelewski Alexander J, Thannhauser Theodore W
机构信息
College of Agriculture, Human and Natural Sciences, Tennessee State University, Nashville, Tennessee, USA.
College of Agriculture, Human and Natural Sciences, Tennessee State University, Nashville, Tennessee, USA
出版信息
Genome Announc. 2014 Dec 18;2(6):e01294-14. doi: 10.1128/genomeA.01294-14.
Abstract
This paper reports the draft genome sequence of new Bacillus cereus strain tsu1, isolated on an agar-cellulose plate. The draft genome sequence is 5.81 Mb, revealing 5,673 coding sequences. It contains genes for cellulose-degradation and biosynthesis pathways of polyhydroxybutyrate (PHB) and 8 rRNA genes (5S, 16S, and 23S).
摘要
本文报道了在琼脂 - 纤维素平板上分离得到的新型蜡样芽孢杆菌菌株tsu1的基因组序列草图。该基因组序列草图为581万个碱基对，包含5673个编码序列。它含有纤维素降解基因、聚羟基丁酸酯（PHB）生物合成途径相关基因以及8个核糖体RNA基因（5S、16S和23S）。
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本文引用的文献
1
Screening and evaluation of polyhydroxybutyrate-producing strains from indigenous isolate Cupriavidus taiwanensis strains.从本土分离的台湾贪铜菌菌株中筛选和评估聚羟基丁酸酯产生菌株。
Int J Mol Sci. 2011 Jan 5;12(1):252-65. doi: 10.3390/ijms12010252.
2
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
3
4
Analysis of Poly-beta-Hydroxybutyrate in Rhizobium japonicum Bacteroids by Ion-Exclusion High-Pressure Liquid Chromatography and UV Detection.用离子排斥高效液相色谱法和紫外检测分析根瘤菌类细菌中的聚-β-羟基丁酸。
Appl Environ Microbiol. 1983 Dec;46(6):1339-44. doi: 10.1128/aem.46.6.1339-1344.1983.
5
CAP3: A DNA sequence assembly program.CAP3：一个DNA序列组装程序。
Genome Res. 1999 Sep;9(9):868-77. doi: 10.1101/gr.9.9.868.
6
A simple and rapid semiquantitative method for measuring cellulase activity in agar media.一种用于测量琼脂培养基中纤维素酶活性的简单快速的半定量方法。
Acta Microbiol Immunol Hung. 1995;42(1):77-80.
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