耐溶剂拜氏梭菌菌株SA-1的全基因组序列
Complete Genome Sequence of Solvent-Tolerant Clostridium beijerinckii Strain SA-1.
作者信息
Noar Jesse, Makwana S T, Bruno-Bárcena José M
机构信息
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA.
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA
出版信息
Genome Announc. 2014 Dec 18;2(6):e01310-14. doi: 10.1128/genomeA.01310-14.
Abstract
We report the complete genome sequence of Clostridium beijerinckii SA-1, derived by directed evolution from C. beijerinckii NCIMB 8052, selecting for enhanced solvent tolerance. This sequence allows for accurate placement of SA-1 as C. beijerinckii, permits functional analyses of mutant phenotypes, and suggests methods for distinguishing SA-1 from its parent.
摘要
我们报告了拜氏梭菌SA-1的完整基因组序列，它是通过对拜氏梭菌NCIMB 8052进行定向进化获得的，筛选条件为提高溶剂耐受性。该序列有助于将SA-1准确归类为拜氏梭菌，可对突变体表型进行功能分析，并为区分SA-1与其亲本提供了方法。
相似文献
1
Complete Genome Sequence of Solvent-Tolerant Clostridium beijerinckii Strain SA-1.耐溶剂拜氏梭菌菌株SA-1的全基因组序列
Genome Announc. 2014 Dec 18;2(6):e01310-14. doi: 10.1128/genomeA.01310-14.
2
Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration.乙酸盐对拜氏梭菌NCIMB 8052溶剂生产及菌株退化的分子和生理方面的影响。
Appl Environ Microbiol. 1999 Feb;65(2):499-505. doi: 10.1128/AEM.65.2.499-505.1999.
3
Enhanced phenolic compounds tolerance response of Clostridium beijerinckii NCIMB 8052 by inactivation of Cbei_3304.通过失活 Cbei_3304 增强凝结芽孢杆菌 NCIMB 8052 对酚类化合物的耐受反应。
Microb Cell Fact. 2018 Mar 3;17(1):35. doi: 10.1186/s12934-018-0884-0.
4
Acetate enhances solvent production and prevents degeneration in Clostridium beijerinckii BA101.乙酸盐可提高拜氏梭菌BA101的溶剂产量并防止其退化。
Appl Microbiol Biotechnol. 1999 Aug;52(2):170-3. doi: 10.1007/s002530051504.
5
Engineering Clostridium beijerinckii with the Cbei_4693 gene knockout for enhanced ferulic acid tolerance.通过敲除拜氏梭菌的Cbei_4693基因构建工程菌以增强对阿魏酸的耐受性。
J Biotechnol. 2016 Jul 10;229:53-7. doi: 10.1016/j.jbiotec.2016.04.052. Epub 2016 May 6.
6
Reclassification of non-type strain Clostridium pasteurianum NRRL B-598 as Clostridium beijerinckii NRRL B-598.非模式菌株巴斯德梭菌NRRL B-598重新分类为拜氏梭菌NRRL B-598。
J Biotechnol. 2017 Feb 20;244:1-3. doi: 10.1016/j.jbiotec.2017.01.003. Epub 2017 Jan 19.
7
Truncation of peptide deformylase reduces the growth rate and stabilizes solvent production in Clostridium beijerinckii NCIMB 8052.肽脱甲酰基酶的截短降低了拜氏梭菌NCIMB 8052的生长速率并稳定了溶剂产量。
Appl Environ Microbiol. 1998 May;64(5):1780-5. doi: 10.1128/AEM.64.5.1780-1785.1998.
8
The ald gene, encoding a coenzyme A-acylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum.编码辅酶A-酰化乙醛脱氢酶的ald基因，使拜氏梭菌以及另外两种产溶剂梭菌与丙酮丁醇梭菌区分开来。
Appl Environ Microbiol. 1999 Nov;65(11):4973-80. doi: 10.1128/AEM.65.11.4973-4980.1999.
9
Glucose uptake in Clostridium beijerinckii NCIMB 8052 and the solvent-hyperproducing mutant BA101.拜氏梭菌NCIMB 8052及溶剂高产突变体BA101中的葡萄糖摄取。
Appl Environ Microbiol. 2001 Nov;67(11):5025-31. doi: 10.1128/AEM.67.11.5025-5031.2001.
10
Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423.贝氏梭菌 DSM6423 的基因组和转录组。
BMC Genomics. 2018 Apr 10;19(1):242. doi: 10.1186/s12864-018-4636-7.
引用本文的文献
1
Draft Genome Sequence of Clostridium beijerinckii Ne1, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.拜氏梭菌Ne1的基因组序列草图，该梭菌来自从澳大利亚地下白蚁鼻白蚁中获得的富集培养物。
Genome Announc. 2015 Apr 23;3(2):e00303-15. doi: 10.1128/genomeA.00303-15.
本文引用的文献
1
Comparative phenotypic analysis and genome sequence of Clostridium beijerinckii SA-1, an offspring of NCIMB 8052.贝氏梭菌 SA-1 的表型分析与基因组序列比较，其为 NCIMB 8052 的后代。
Microbiology (Reading). 2013 Dec;159(Pt 12):2558-2570. doi: 10.1099/mic.0.069534-0. Epub 2013 Sep 25.
2
Meta-analysis and functional validation of nutritional requirements of solventogenic Clostridia growing under butanol stress conditions and coutilization of D-glucose and D-xylose.溶剂梭菌在丁醇胁迫条件下生长的营养需求的荟萃分析和功能验证以及 D-葡萄糖和 D-木糖的共利用。
Appl Environ Microbiol. 2011 Jul;77(13):4473-85. doi: 10.1128/AEM.00116-11. Epub 2011 May 20.
3
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.BreakDancer：一种用于基因组结构变异高分辨率图谱绘制的算法。
Nat Methods. 2009 Sep;6(9):677-81. doi: 10.1038/nmeth.1363. Epub 2009 Aug 9.
4
Mapping short DNA sequencing reads and calling variants using mapping quality scores.使用比对质量分数比对短DNA测序读数并识别变异。
Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108. Epub 2008 Aug 19.
5
Transformation of Heat-Treated Clostridium acetobutylicum Protoplasts with pUB110 Plasmid DNA.热处理梭菌丙酮丁醇原生质体的 pUB110 质粒 DNA 转化。
Appl Environ Microbiol. 1984 Oct;48(4):737-42. doi: 10.1128/aem.48.4.737-742.1984.
6
Butanol Production by a Butanol-Tolerant Strain of Clostridium acetobutylicum in Extruded Corn Broth.在膨化玉米浆中利用耐丁醇的丙酮丁醇梭菌生产丁醇。
Appl Environ Microbiol. 1983 Mar;45(3):966-73. doi: 10.1128/aem.45.3.966-973.1983.
7
Cultures of "Clostridium acetobutylicum" from various collections comprise Clostridium acetobutylicum, Clostridium beijerinckii, and two other distinct types based on DNA-DNA reassociation.来自不同菌种保藏中心的“丙酮丁醇梭菌”培养物包括丙酮丁醇梭菌、拜氏梭菌以及另外两种基于DNA-DNA重缔合的不同类型。
Int J Syst Bacteriol. 1997 Apr;47(2):420-4. doi: 10.1099/00207713-47-2-420.
Zotero 插件