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一种引物统御一切:能将BBa_B0034核糖体结合位点添加到任何编码标准10生物砖的通用引物。

One primer to rule them all: universal primer that adds BBa_B0034 ribosomal binding site to any coding standard 10 BioBrick.

作者信息

Bryksin Anton V, Bachman Haylee N, Cooper Spencer W, Balavijayan Tilak, Blackstone Rachael M, Du Haoli, Jenkins Jackson P, Haynes Casey L, Siemer Jessica L, Fiore Vincent F, Barker Thomas H

机构信息

Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University , Atlanta, Georgia 30332, United States.

出版信息

ACS Synth Biol. 2014 Dec 19;3(12):956-9. doi: 10.1021/sb500047r.

Abstract

Here, we present a universal, simple, efficient, and reliable way to add small BioBrick parts to any BioBrick via PCR that is compatible with BioBrick assembly standard 10. As a proof of principle, we have designed a universal primer, rbs_B0034, that contains a ribosomal binding site (RBS; BBa_B0034) and that can be used in PCR to amplify any coding BioBrick that starts with ATG. We performed test PCRs with rbs_B0034 on 31 different targets and found it to be 93.6% efficient. Moreover, when supplemented with a complementary primer, addition of RBS can be accomplished via whole plasmid site-directed mutagenesis, thus reducing the time required for further assembly of composite parts. The described method brings simplicity to the addition of small parts, such as regulatory elements to existing BioBricks. The final product of the PCR assembly is indistinguishable from the standard or 3A BioBrick assembly.

摘要

在此,我们展示了一种通用、简单、高效且可靠的方法,可通过与BioBrick装配标准10兼容的PCR将小的BioBrick部件添加到任何BioBrick中。作为原理验证,我们设计了一种通用引物rbs_B0034,它包含一个核糖体结合位点(RBS;BBa_B0034),可用于PCR扩增任何以ATG开头的编码BioBrick。我们用rbs_B0034对31个不同的靶标进行了测试PCR,发现其效率为93.6%。此外,当补充一个互补引物时,可通过全质粒定点诱变来实现RBS的添加,从而减少进一步组装复合部件所需的时间。所描述的方法为向现有BioBrick添加小部件(如调控元件)带来了简便性。PCR组装的最终产物与标准或3A BioBrick组装无法区分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b457/4277749/0d47c629d821/sb-2014-00047r_0001.jpg

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