• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

高分辨率冷冻电子显微镜揭示了孔蛋白蛋白质-脂质界面处紧密堆积的β结构。

Densely packed beta-structure at the protein-lipid interface of porin is revealed by high-resolution cryo-electron microscopy.

作者信息

Sass H J, Büldt G, Beckmann E, Zemlin F, van Heel M, Zeitler E, Rosenbusch J P, Dorset D L, Massalski A

机构信息

Department of Physics/Biophysics, Freie Universität Berlin, F.R.G.

出版信息

J Mol Biol. 1989 Sep 5;209(1):171-5. doi: 10.1016/0022-2836(89)90180-0.

DOI:10.1016/0022-2836(89)90180-0
PMID:2553985
Abstract

Porin is an integral membrane protein that forms channels across the outer membrane of Escherichia coli. Electron microscopic studies of negatively stained two-dimensional porin crystals have shown three stain accumulations per porin trimer, revealing the locations of pores spanning the membrane. In this study, reconstituted porin lattices embedded in glucose were investigated using the low-dose technique on a cryo-electron microscope equipped with a helium-cooled superconducting objective lens. The specimen temperature was maintained at 5 K to yield an improved microscopic and specimen stability. Under these conditions, we obtained for the first time electron diffraction patterns from porin lattices to a resolution of 3.2 A and images showing optical diffraction up to a resolution of 4.9 A. Applying correlation averaging techniques to the digitized micrographs, we were able to reconstruct projected images of the porin trimer to a resolution of up to 3.5 A. In the final projection maps, amplitudes from electron diffraction and phases from these images were combined. The predominant feature is a high-density narrow band (about 6 A in thickness) that delineates the outer perimeter of the trimer. Since the molecule consists of almost exclusively beta-sheet structure, as revealed by spectroscopic data, we conclude that this band is a cylindrical beta-pleated sheet crossing the membrane nearly perpendicularly to its plane. Another intriguing finding is a low-density area (about 70 A2) situated in the centre of the trimer.

摘要

孔蛋白是一种整合膜蛋白,可在大肠杆菌的外膜上形成通道。对经负染色的二维孔蛋白晶体进行的电子显微镜研究表明,每个孔蛋白三聚体有三个染色积累区,揭示了跨膜孔的位置。在本研究中,使用配备氦冷却超导物镜的低温电子显微镜上的低剂量技术,对嵌入葡萄糖中的重组孔蛋白晶格进行了研究。将样品温度保持在5 K以提高显微镜分辨率和样品稳定性。在这些条件下,我们首次获得了孔蛋白晶格的电子衍射图,分辨率达到3.2 Å,以及显示光学衍射的图像,分辨率达到4.9 Å。对数字化显微照片应用相关平均技术,我们能够将孔蛋白三聚体的投影图像重建到高达3.5 Å的分辨率。在最终的投影图中,结合了电子衍射的振幅和这些图像的相位。主要特征是一条高密度窄带(厚度约6 Å),勾勒出三聚体的外周。由于光谱数据显示该分子几乎完全由β-折叠结构组成,我们得出结论,这条带是一个几乎垂直于膜平面穿过膜的圆柱形β-折叠片层。另一个有趣的发现是位于三聚体中心的低密度区域(约70 Ų)。

相似文献

1
Densely packed beta-structure at the protein-lipid interface of porin is revealed by high-resolution cryo-electron microscopy.高分辨率冷冻电子显微镜揭示了孔蛋白蛋白质-脂质界面处紧密堆积的β结构。
J Mol Biol. 1989 Sep 5;209(1):171-5. doi: 10.1016/0022-2836(89)90180-0.
2
Molecular design of PhoE porin and its functional consequences.
J Mol Biol. 1989 Jan 20;205(2):407-19. doi: 10.1016/0022-2836(89)90351-3.
3
Three-dimensional electron diffraction of PhoE porin to 2.8 A resolution.
J Mol Biol. 1990 Oct 5;215(3):429-38. doi: 10.1016/s0022-2836(05)80362-6.
4
Structure of PhoE porin in projection at 3.5 A resolution.3.5埃分辨率下PhoE孔蛋白的投影结构。
J Struct Biol. 1990 Mar;103(1):57-63. doi: 10.1016/1047-8477(90)90086-r.
5
Structural and functional properties of porin channels in E. coli outer membranes.大肠杆菌外膜中孔蛋白通道的结构与功能特性
Experientia. 1990 Feb 15;46(2):167-73.
6
Identification and Characterization of the Major Porin of Desulfovibrio vulgaris Hildenborough.嗜热栖热脱硫弧菌主要孔蛋白的鉴定与特性分析
J Bacteriol. 2017 Oct 31;199(23). doi: 10.1128/JB.00286-17. Print 2017 Dec 1.
7
Structure of the porin from a bacterial stalk.来自细菌柄部的孔蛋白结构。
FEBS Lett. 1987 Jan 19;211(1):53-8. doi: 10.1016/0014-5793(87)81273-5.
8
Structural architecture of an outer membrane channel as determined by electron crystallography.通过电子晶体学确定的外膜通道的结构架构。
Nature. 1991 Mar 14;350(6314):167-70. doi: 10.1038/350167a0.
9
In-plane phase transition of an integral membrane protein: nucleation of the OmpF matrix porin rectangular polymorph.整合膜蛋白的面内相变:OmpF 基质孔蛋白矩形多晶型的成核
Proc Natl Acad Sci U S A. 1989 Aug;86(16):6143-7. doi: 10.1073/pnas.86.16.6143.
10
A novel OmpY porin from Yersinia pseudotuberculosis: structure, channel-forming activity and trimer thermal stability.来自假结核耶尔森氏菌的新型 OmpY 孔蛋白:结构、通道形成活性和三聚体热稳定性。
J Biomol Struct Dyn. 2011 Feb;28(4):517-33. doi: 10.1080/07391102.2011.10508592.

引用本文的文献

1
Phase separation in the outer membrane of .外膜中的相分离。
Proc Natl Acad Sci U S A. 2021 Nov 2;118(44). doi: 10.1073/pnas.2112237118.
2
Present and future of membrane protein structure determination by electron crystallography.电镜晶体学解析膜蛋白结构的现状与展望。
Adv Protein Chem Struct Biol. 2010;81:33-60. doi: 10.1016/B978-0-12-381357-2.00002-5.
3
Definition and estimation of resolution in single-particle reconstructions.定义和估计单颗粒重建中的分辨率。
Structure. 2010 Jul 14;18(7):768-75. doi: 10.1016/j.str.2010.05.008.
4
A maximum likelihood approach to two-dimensional crystals.二维晶体的最大似然方法。
J Struct Biol. 2007 Dec;160(3):362-74. doi: 10.1016/j.jsb.2007.09.013. Epub 2007 Sep 25.
5
Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation.单体外膜孔蛋白OmpG处于开放和关闭构象时的结构。
EMBO J. 2006 Aug 9;25(15):3702-13. doi: 10.1038/sj.emboj.7601237. Epub 2006 Aug 3.
6
Structure of the skeletal muscle calcium release channel activated with Ca2+ and AMP-PCP.由Ca2+和AMP-PCP激活的骨骼肌钙释放通道的结构。
Biophys J. 1999 Oct;77(4):1936-44. doi: 10.1016/S0006-3495(99)77035-9.
7
General model for lipid-mediated two-dimensional array formation of membrane proteins: application to bacteriorhodopsin.脂质介导的膜蛋白二维阵列形成的通用模型:应用于细菌视紫红质。
Biophys J. 1998 Sep;75(3):1180-8. doi: 10.1016/S0006-3495(98)74037-8.
8
The portal protein of bacteriophage SPP1: a DNA pump with 13-fold symmetry.噬菌体SPP1的门户蛋白:一种具有13重对称性的DNA泵。
EMBO J. 1993 Apr;12(4):1303-9. doi: 10.1002/j.1460-2075.1993.tb05775.x.
9
Direct evidence of induction of interdigitated gel structure in large unilamellar vesicles of dipalmitoylphosphatidylcholine by ethanol: studies by excimer method and high-resolution electron cryomicroscopy.乙醇诱导二棕榈酰磷脂酰胆碱大单层囊泡中叉指状凝胶结构形成的直接证据:准分子方法和高分辨率电子冷冻显微镜研究
Biophys J. 1994 Mar;66(3 Pt 1):729-33. doi: 10.1016/s0006-3495(94)80848-3.
10
Thickness determination of biological samples with a zeta-calibrated scanning tunneling microscope.使用ζ校准扫描隧道显微镜测定生物样品的厚度
Proc Natl Acad Sci U S A. 1990 Dec;87(23):9343-7. doi: 10.1073/pnas.87.23.9343.