The I-TASSER Suite: protein structure and function prediction.
作者信息
Yang Jianyi, Yan Renxiang, Roy Ambrish, Xu Dong, Poisson Jonathan, Zhang Yang
机构信息
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.
1] Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA. [2] Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, USA.
出版信息
Nat Methods. 2015 Jan;12(1):7-8. doi: 10.1038/nmeth.3213.
Abstract
摘要
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本文引用的文献
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Proteins. 2014 Feb;82 Suppl 2(0 2):1-6. doi: 10.1002/prot.24452. Epub 2013 Dec 17.
2
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment.利用互补结合特异性亚结构比较和序列轮廓比对识别蛋白质-配体结合位点。
Bioinformatics. 2013 Oct 15;29(20):2588-95. doi: 10.1093/bioinformatics/btt447. Epub 2013 Aug 23.
3
Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10.I-TASSER与QUARK在蛋白质结构预测关键评估第10轮（CASP10）中用于基于模板和从头开始的蛋白质结构预测的相互作用
Proteins. 2014 Feb;82 Suppl 2(0 2):175-87. doi: 10.1002/prot.24341. Epub 2013 Aug 31.
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The Protein Model Portal--a comprehensive resource for protein structure and model information.蛋白质模型门户——蛋白质结构和模型信息的综合资源。
Database (Oxford). 2013 Apr 26;2013:bat031. doi: 10.1093/database/bat031. Print 2013.
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BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions.BioLiP：一个半人工 curated 的数据库，用于生物学相关的配体-蛋白质相互作用。
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Nat Protoc. 2010 Apr;5(4):725-38. doi: 10.1038/nprot.2010.5. Epub 2010 Mar 25.
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