Hass Mathias A S, Liu Wei-Min, Agafonov Roman V, Otten Renee, Phung Lien A, Schilder Jesika T, Kern Dorothee, Ubbink Marcellus
Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
J Biomol NMR. 2015 Feb;61(2):123-36. doi: 10.1007/s10858-014-9894-3. Epub 2015 Jan 8.
NMR relaxation dispersion techniques provide a powerful method to study protein dynamics by characterizing lowly populated conformations that are in dynamic exchange with the major state. Paramagnetic NMR is a versatile tool for investigating the structures and dynamics of proteins. These two techniques were combined here to measure accurate and precise pseudocontact shifts of a lowly populated conformation. This method delivers valuable long-range structural restraints for higher energy conformations of macromolecules in solution. Another advantage of combining pseudocontact shifts with relaxation dispersion is the increase in the amplitude of dispersion profiles. Lowly populated states are often involved in functional processes, such as enzyme catalysis, signaling, and protein/protein interactions. The presented results also unveil a critical problem with the lanthanide tag used to generate paramagnetic relaxation dispersion effects in proteins, namely that the motions of the tag can interfere severely with the observation of protein dynamics. The two-point attached CLaNP-5 lanthanide tag was linked to adenylate kinase. From the paramagnetic relaxation dispersion only motion of the tag is observed. The data can be described accurately by a two-state model in which the protein-attached tag undergoes a 23° tilting motion on a timescale of milliseconds. The work demonstrates the large potential of paramagnetic relaxation dispersion and the challenge to improve current tags to minimize relaxation dispersion from tag movements.
核磁共振弛豫色散技术提供了一种强大的方法,通过表征与主要状态处于动态交换的低丰度构象来研究蛋白质动力学。顺磁核磁共振是研究蛋白质结构和动力学的一种通用工具。这里将这两种技术结合起来,以测量低丰度构象的准确且精确的赝接触位移。该方法为溶液中大分子的高能构象提供了有价值的远程结构限制。将赝接触位移与弛豫色散相结合的另一个优点是色散曲线幅度的增加。低丰度状态通常参与功能过程,如酶催化、信号传导和蛋白质/蛋白质相互作用。所呈现的结果还揭示了用于在蛋白质中产生顺磁弛豫色散效应的镧系标签的一个关键问题,即标签的运动会严重干扰蛋白质动力学的观测。两点连接的CLaNP - 5镧系标签与腺苷酸激酶相连。从顺磁弛豫色散中仅观察到标签的运动。这些数据可以用一个两态模型准确描述,其中与蛋白质相连的标签在毫秒时间尺度上经历23°的倾斜运动。这项工作展示了顺磁弛豫色散的巨大潜力以及改进当前标签以最小化标签运动引起的弛豫色散的挑战。