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沼泽黄杆菌新种,从湿地土壤中分离得到。

Flavobacterium palustre sp. nov., isolated from wetland soil.

作者信息

Feng Hao, Zeng Yanhua, Huang Yili

机构信息

Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, PR China.

出版信息

Int J Syst Evol Microbiol. 2015 Mar;65(Pt 3):1003-1007. doi: 10.1099/ijs.0.000054. Epub 2015 Jan 6.

Abstract

A Gram-staining-negative, non-motile, yellow-coloured, rod-shaped bacterium, designated S44(T), was isolated from bankside soil of Xixi wetland, located in Zhejiang province, China. Growth of strain S44(T) was observed at 6-37 °C (optimum, 28 °C) and at pH 6.0-9.0 (optimum, 7.0). No growth occurred in the presence of >2 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain S44(T) represented a member of the genus Flavobacterium, showing the highest sequence similarities to the sequences from Flavobacterium succinicans DSM 4002(T) (96.9 %), Flavobacterium reichenbachii WB 3.2-61(T) (96.6 %) and Flavobacterium glycines NCBI 105008(T) (96.5 %). The G+C content of the genomic DNA was 33.6 mol%. The predominant cellular fatty acids were C15 : 0, iso-C15 : 0, anteiso-C15 : 0 and summed feature 3 (comprising C16 : 1ω7c and/or iso-C15 : 0 2-OH), and the major respiratory quinone was menaquinone 6 (MK-6). The major polar lipids were phosphatidylethanolamine, two unknown aminolipids, two unknown aminophospholipids and four unknown polar lipids. On the basis of the phenotypic and genotypic data, it is proposed that the isolate S44(T) be classified as representing a novel species of the genus Flavobacterium, for which the name Flavobacterium palustre sp. nov. is proposed. The type strain is S44(T) ( = CGMCC 1.12811(T) = NBRC 110389(T)).

摘要

从中国浙江省西溪湿地的岸边土壤中分离出一株革兰氏染色阴性、无运动性、黄色、杆状的细菌,命名为S44(T)。菌株S44(T)在6-37 °C(最适温度为28 °C)和pH 6.0-9.0(最适pH为7.0)条件下生长。在NaCl浓度>2%(w/v)时不生长。基于16S rRNA基因序列的系统发育分析表明,菌株S44(T)属于黄杆菌属,与琥珀黄杆菌DSM 4002(T)(96.9%)、赖兴巴赫黄杆菌WB 3.2-61(T)(96.6%)和甘氨酸黄杆菌NCBI 105008(T)(96.5%)的序列相似性最高。基因组DNA的G+C含量为33.6 mol%。主要的细胞脂肪酸为C15 : 0、异-C15 : 0、anteiso-C15 : 0和特征性总和3(包括C16 : 1ω7c和/或异-C15 : 0 2-OH),主要的呼吸醌为甲基萘醌6(MK-6)。主要的极性脂为磷脂酰乙醇胺、两种未知氨基脂、两种未知氨基磷脂和四种未知极性脂。根据表型和基因型数据,建议将分离株S44(T)归类为黄杆菌属的一个新物种,命名为沼泽黄杆菌(Flavobacterium palustre sp. nov.)。模式菌株为S44(T)(=CGMCC 1.12811(T)=NBRC 110389(T))。

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