Kim Sang Beom, Palmer Jeremy C, Debenedetti Pablo G
Department of Chemical and Biological Engineering, Princeton University , Princeton, New Jersey 08544, United States.
J Phys Chem B. 2015 Feb 5;119(5):1847-56. doi: 10.1021/jp510172w. Epub 2015 Jan 23.
We present the first simulation study of the impact of protein matrix structure on water sorption along with a new computational method to hydrate and dehydrate protein systems reversibly. To understand the impact of the underlying structure of the protein matrix on the hydration process, we compare three types of protein substrates comprised of Trp-cage miniproteins with varying degrees of monomer translational and orientational order and monomer denaturation. We show that the water sorption isotherms are qualitatively and quantitatively very similar for the Trp-cage matrices independently of the underlying degree of disorder, which is consistent with the experimental observation that the qualitative features of water sorption isotherms are nearly universal for globular proteins. We also show that the Trp-cage matrices with varying disorder share similar trends in volumetric swelling, solvent accessibility, and protein-water hydrogen bonding during the sorption processes, while hydrogen bonding between protein molecules depends sensitively on the matrix characteristics (crystal, powder, and thermally denatured powder). Volumetric swelling, solvent accessibility, and protein-water hydrogen bonds exhibit no hysteresis when plotted as a function of hydration level and are thus controlled exclusively by the protein's water content.
我们展示了关于蛋白质基质结构对水吸附影响的首个模拟研究,以及一种使蛋白质系统可逆地水合和脱水的新计算方法。为了理解蛋白质基质的基础结构对水合过程的影响,我们比较了由色氨酸笼状微蛋白组成的三种类型的蛋白质底物,它们具有不同程度的单体平移和取向有序性以及单体变性。我们表明,对于色氨酸笼状基质,无论基础无序程度如何,水吸附等温线在定性和定量上都非常相似,这与实验观察结果一致,即水吸附等温线的定性特征对于球状蛋白质几乎是普遍的。我们还表明,具有不同无序程度的色氨酸笼状基质在吸附过程中的体积膨胀、溶剂可及性和蛋白质 - 水氢键方面具有相似的趋势,而蛋白质分子之间的氢键则敏感地取决于基质特征(晶体、粉末和热变性粉末)。当作为水合水平的函数绘制时,体积膨胀、溶剂可及性和蛋白质 - 水氢键没有滞后现象,因此仅由蛋白质的含水量控制。