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使用纵向生物标志物的贝叶斯混合分段线性模型评估治疗效果。

Evaluation of treatment efficacy using a Bayesian mixture piecewise linear model of longitudinal biomarkers.

作者信息

Zhao Lili, Feng Dai, Neelon Brian, Buyse Marc

机构信息

Department of Biostatistics, University of Michigan, Ann Arbor, 48109, MI, U.S.A.

出版信息

Stat Med. 2015 May 10;34(10):1733-46. doi: 10.1002/sim.6445. Epub 2015 Jan 29.

DOI:10.1002/sim.6445
PMID:25630845
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5995342/
Abstract

Prostate-specific antigen (PSA) is a widely used marker in clinical trials for patients with prostate cancer. We develop a mixture model to estimate longitudinal PSA trajectory in response to treatment. The model accommodates subjects responding and not responding to therapy through a mixture of two functions. A responder is described by a piecewise linear function, represented by an intercept, a PSA decline rate, a period of PSA decline, and a PSA rising rate; a nonresponder is described by an increasing linear function with an intercept and a PSA rising rate. Each trajectory is classified as a linear or a piecewise linear function with a certain probability, and the weighted average of these two functions sufficiently characterizes a variety of patterns of PSA trajectories. Furthermore, this mixture structure enables us to derive clinically useful endpoints such as a response rate and time-to-progression, as well as biologically meaningful endpoints such as a cancer cell killing fraction and tumor growth delay. We compare our model with the most commonly used dynamic model in the literature and show its advantages. Finally, we illustrate our approach using data from two multicenter prostate cancer trials. The R code used to produce the analyses reported in this paper is available on request.

摘要

前列腺特异性抗原(PSA)是前列腺癌患者临床试验中广泛使用的标志物。我们开发了一种混合模型来估计前列腺癌患者接受治疗后的PSA纵向轨迹。该模型通过两种函数的混合来拟合对治疗有反应和无反应的患者。有反应者由分段线性函数描述,该函数由截距、PSA下降率、PSA下降期和PSA上升率表示;无反应者由具有截距和PSA上升率的递增线性函数描述。每个轨迹以一定概率被分类为线性或分段线性函数,这两个函数的加权平均值充分表征了各种PSA轨迹模式。此外,这种混合结构使我们能够得出临床上有用的终点指标,如反应率和疾病进展时间,以及生物学上有意义的终点指标,如癌细胞杀伤分数和肿瘤生长延迟。我们将我们的模型与文献中最常用的动态模型进行比较,并展示了其优势。最后,我们使用来自两项多中心前列腺癌试验的数据说明了我们的方法。用于生成本文分析结果的R代码可根据要求提供。

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本文引用的文献

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Bayesian piecewise mixture model for racial disparity in prostate cancer progression.用于前列腺癌进展中种族差异的贝叶斯分段混合模型。
Comput Stat Data Anal. 2012 Feb 1;56(2):362-369. doi: 10.1016/j.csda.2011.07.011.
2
Evaluation of tumor-size response metrics to predict overall survival in Western and Chinese patients with first-line metastatic colorectal cancer.评估肿瘤大小反应指标,以预测一线转移性结直肠癌中西方和中国患者的总生存期。
J Clin Oncol. 2013 Jun 10;31(17):2110-4. doi: 10.1200/JCO.2012.45.0973. Epub 2013 May 6.
3
Assessment of antitumor activity for tumor xenograft studies using exponential growth models.使用指数生长模型评估肿瘤异种移植研究中的抗肿瘤活性。
J Biopharm Stat. 2011 May;21(3):472-83. doi: 10.1080/10543406.2010.481802.
4
Reducing sample sizes in two-stage phase II cancer trials by using continuous tumour shrinkage end-points.利用肿瘤持续退缩终点减少两阶段 II 期癌症试验的样本量。
Eur J Cancer. 2011 May;47(7):983-9. doi: 10.1016/j.ejca.2010.12.007. Epub 2011 Jan 14.
5
Bayesian hierarchical changepoint methods in modeling the tumor growth profiles in xenograft experiments.贝叶斯分层变点方法在建模异种移植实验中肿瘤生长曲线中的应用。
Clin Cancer Res. 2011 Mar 1;17(5):1057-64. doi: 10.1158/1078-0432.CCR-10-1935. Epub 2010 Dec 3.
6
Tumor regression and growth rates determined in five intramural NCI prostate cancer trials: the growth rate constant as an indicator of therapeutic efficacy.在五个 NCI 前列腺癌室内试验中确定的肿瘤退缩和生长速度:生长速度常数作为治疗效果的指标。
Clin Cancer Res. 2011 Feb 15;17(4):907-17. doi: 10.1158/1078-0432.CCR-10-1762. Epub 2010 Nov 24.
7
Development of a modeling framework to simulate efficacy endpoints for motesanib in patients with thyroid cancer.开发一个建模框架,以模拟甲状腺癌患者使用 motesanib 的疗效终点。
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