Kuhnert Peter, Thomann Andreas, Brodard Isabelle, Haefeli Willi, Korczak Bożena M
Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Klein-und Zootierpraxis, Ostermundigen, Switzerland.
Int J Syst Evol Microbiol. 2015 Apr;65(Pt 4):1251-1255. doi: 10.1099/ijs.0.000089. Epub 2015 Jan 29.
A polyphasic taxonomic analysis was carried out on 11 uncommon Gram-stain-negative, non-motile, catalase- and oxidase-positive, but indole-negative, bacterial strains isolated from tortoises. Phenotypically and genetically they represented a homogeneous group of organisms most closely related to, but distinct from, Uruburuella suis. In a reconstructed 16S rRNA gene tree they clustered on a monophyletic branch next to U. suis with gene similarities between strains of 99.5-100%, and of up to 98.2% with U. suis . DNA-DNA hybridization indicated the organisms represented a novel species with only 40% DNA-DNA similarity with U. suis . Partial sequencing of rpoB resulted in two subclusters confirming the 16S rRNA gene phylogeny; both genes allowed clear separation and identification of the novel species. Furthermore, they could be unambiguously identified by matrix-assisted laser desorption ionization time-of-flight MS, where, again, they formed a highly homogeneous cluster separate from U. suis and other members of the family Neisseriaceae . The major fatty acids were C(16 : 0) and summed feature C(16 : 1)ω7c/iso-C(15 : 0) 2-OH. The DNA G+C content was 54.4 mol%. Based on phenotypic and genetic data we propose classifying these organisms as representatives of a novel species named Uruburuella testudinis sp. nov. The type strain is 07_OD624(T) ( = DSM 26510(T) = CCUG 63373(T)).
对从乌龟分离出的11株罕见的革兰氏染色阴性、无动力、过氧化氢酶和氧化酶阳性但吲哚阴性的细菌菌株进行了多相分类分析。从表型和基因角度来看,它们代表了一组同质的生物体,与猪乌鲁布鲁氏菌关系最为密切,但又有所不同。在重建的16S rRNA基因树中,它们聚集在猪乌鲁布鲁氏菌旁边的一个单系分支上,菌株间的基因相似性为99.5 - 100%,与猪乌鲁布鲁氏菌的相似性高达98.2%。DNA - DNA杂交表明这些生物体代表了一个新物种,与猪乌鲁布鲁氏菌的DNA - DNA相似性仅为40%。rpoB的部分测序产生了两个亚群,证实了16S rRNA基因系统发育;这两个基因都能清晰地分离和鉴定该新物种。此外,通过基质辅助激光解吸电离飞行时间质谱可以明确鉴定它们,在该质谱中,它们再次形成了一个与猪乌鲁布鲁氏菌和奈瑟菌科其他成员分开的高度同质的簇。主要脂肪酸为C(16 : 0)和总和特征C(16 : 1)ω7c/异-C(15 : 0) 2-OH。DNA G + C含量为54.4 mol%。基于表型和基因数据,我们建议将这些生物体分类为一个名为龟乌鲁布鲁氏菌(Uruburuella testudinis sp. nov.)的新物种的代表。模式菌株为07_OD624(T)(= DSM 26510(T) = CCUG 63373(T))。