Heuberger Benjamin D, Pal Ayan, Del Frate Francesca, Topkar Ved V, Szostak Jack W
Howard Hughes Medical Institute, Center for Computational and Integrative Biology, and Department of Molecular Biology, Simches Research Center, Massachusetts General Hospital , Boston, Massachusetts 02114, United States.
J Am Chem Soc. 2015 Feb 25;137(7):2769-75. doi: 10.1021/jacs.5b00445. Epub 2015 Feb 16.
The nonenzymatic replication of RNA oligonucleotides is thought to have played a key role in the origin of life prior to the evolution of ribozyme-catalyzed RNA replication. Although the copying of oligo-C templates by 2-methylimidazole-activated G monomers can be quite efficient, the copying of mixed sequence templates, especially those containing A and U, is particularly slow and error-prone. The greater thermodynamic stability of the 2-thio-U(s(2)U):A base pair, relative to the canonical U:A base pair, suggests that replacing U with s(2)U might enhance the rate and fidelity of the nonenzymatic copying of RNA templates. Here we report that this single atom substitution in the activated monomer improves both the kinetics and the fidelity of nonenzymatic primer extension on mixed-sequence RNA templates. In addition, the mean lengths of primer extension products obtained with s(2)U is greater than those obtained with U, augmenting the potential for nonenzymatic replication of heritable function-rich sequences. We suggest that noncanonical nucleotides such as s(2)U may have played a role during the infancy of the RNA world by facilitating the nonenzymatic replication of genomic RNA oligonucleotides.
在核酶催化的RNA复制进化之前,RNA寡核苷酸的非酶促复制被认为在生命起源中起关键作用。尽管2-甲基咪唑活化的G单体对寡聚-C模板的复制效率相当高,但混合序列模板的复制,尤其是那些含有A和U的模板,特别缓慢且容易出错。相对于标准的U:A碱基对,2-硫代-U(s(2)U):A碱基对具有更高的热力学稳定性,这表明用s(2)U取代U可能会提高RNA模板非酶促复制的速率和保真度。在此我们报告,活化单体中的这种单原子取代提高了混合序列RNA模板上非酶促引物延伸的动力学和保真度。此外,用s(2)U获得的引物延伸产物的平均长度大于用U获得的产物,增加了富含功能的可遗传序列进行非酶促复制的潜力。我们认为,诸如s(2)U之类的非规范核苷酸可能在RNA世界的初期通过促进基因组RNA寡核苷酸的非酶促复制发挥了作用。