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蟋蟀线粒体DNA大小变异的分子群体遗传学

Molecular population genetics of mtDNA size variation in crickets.

作者信息

Rand D M, Harrison R G

机构信息

Department of Biology, Yale University, New Haven, Connecticut 06511.

出版信息

Genetics. 1989 Mar;121(3):551-69. doi: 10.1093/genetics/121.3.551.

DOI:10.1093/genetics/121.3.551
PMID:2565855
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1203640/
Abstract

Nucleotide sequence analysis of a region of cricket (Gryllus firmus) mtDNA showing discrete length variation revealed tandemly repeated sequences 220 base pairs (bp) in length. The repeats consist of 206 bp sequences bounded by the dyad symmetric sequence 5'GGGGGCATGCCCCC3'. The sequence data showed that mtDNA size variation in this species is due to variation in the number of copies of tandem repeats. Southern blot analysis was used to document the frequency of crickets heteroplasmic for two or more different-sized mtDNAs. In New England populations of G. firmus and a close relative Gryllus pennsylvanicus approximately 60% of the former and 45% of the latter were heteroplasmic. From densitometry of autoradiographs the frequencies of mtDNA size classes were determined for the population samples and are shown to very different in the two species. However, in populations where hybridization between the two species has occurred, the frequencies of size classes and cytoplasmic genotypes in each species' distinct mtDNA lineage were shifted in a manner suggesting nuclear-cytoplasmic interactions. The data were applied to reported diversity indices and hierarchical statistics. The hierarchical statistics indicated that the greatest proportion of variation for mtDNA size was due to variation among individuals in their cytoplasmic genotypes (heteroplasmic or homoplasmic state). The diversity indices were used to estimate a per-generation mutation rate for size variants of 10(-4). The data are discussed in light of the relationship between genetic drift and mutation in maintaining variation for mtDNA size.

摘要

对蟋蟀(Gryllus firmus)线粒体DNA(mtDNA)一个显示离散长度变异区域的核苷酸序列分析揭示了长度为220个碱基对(bp)的串联重复序列。这些重复序列由206 bp的序列组成,其边界为二元对称序列5'GGGGGCATGCCCCC3'。序列数据表明,该物种mtDNA大小的变异是由于串联重复拷贝数的变异所致。Southern印迹分析用于记录具有两种或更多不同大小mtDNA的异质蟋蟀的频率。在新英格兰地区的G. firmus种群以及其近缘种宾夕法尼亚蟋蟀(Gryllus pennsylvanicus)中,前者约60%、后者约45%为异质的。通过放射自显影片的光密度测定,确定了种群样本中mtDNA大小类别的频率,结果显示这两个物种的频率差异很大。然而,在两个物种发生杂交的种群中,每个物种独特的mtDNA谱系中大小类别和细胞质基因型的频率发生了变化,这表明存在核质相互作用。这些数据被应用于报道的多样性指数和层次统计分析。层次统计分析表明,mtDNA大小变异的最大比例是由于个体细胞质基因型(异质或同质状态)的变异所致。多样性指数用于估计大小变异体的每代突变率为10^(-4)。根据遗传漂变和突变在维持mtDNA大小变异方面的关系对数据进行了讨论。