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转录中的核心启动子:老问题,新见解。

Core promoters in transcription: old problem, new insights.

作者信息

Roy Ananda L, Singer Dinah S

机构信息

Department of Developmental, Molecular, and Chemical Biology, Tufts University School of Medicine, Boston, MA, USA.

Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

出版信息

Trends Biochem Sci. 2015 Mar;40(3):165-71. doi: 10.1016/j.tibs.2015.01.007. Epub 2015 Feb 10.

DOI:10.1016/j.tibs.2015.01.007
PMID:25680757
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4340783/
Abstract

Early studies established that transcription initiates within an approximately 50 bp DNA segment capable of nucleating the assembly of RNA polymerase II (Pol II) and associated general transcription factors (GTFs) necessary for transcriptional initiation; this region is called a core promoter. Subsequent analyses identified a series of conserved DNA sequence elements, present in various combinations or not at all, in core promoters. Recent genome-wide analyses have provided further insights into the complexity of core promoter architecture and function. Here we review recent studies that delineate the active role of core promoters in the transcriptional regulation of diverse physiological systems.

摘要

早期研究表明,转录起始于一段约50 bp的DNA片段内,该片段能够促使RNA聚合酶II(Pol II)以及转录起始所需的相关通用转录因子(GTF)组装;这个区域被称为核心启动子。随后的分析在核心启动子中鉴定出一系列保守的DNA序列元件,它们以各种组合形式存在或根本不存在。最近的全基因组分析进一步揭示了核心启动子结构和功能的复杂性。在这里,我们回顾了最近的研究,这些研究描绘了核心启动子在多种生理系统转录调控中的积极作用。

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本文引用的文献

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Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.新生RNA分析揭示了哺乳动物启动子和增强子起始区域的统一结构。
Nat Genet. 2014 Dec;46(12):1311-20. doi: 10.1038/ng.3142. Epub 2014 Nov 10.
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piRNAs.PIWI相互作用RNA
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TRF2, but not TBP, mediates the transcription of ribosomal protein genes.TRF2 介导核糖体蛋白基因的转录,而 TBP 则不介导。
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Cell. 2014 Jun 5;157(6):1364-1379. doi: 10.1016/j.cell.2014.04.031.
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An atlas of active enhancers across human cell types and tissues.人类细胞类型和组织中活跃增强子图谱。
Nature. 2014 Mar 27;507(7493):455-461. doi: 10.1038/nature12787.
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Argonaute-bound small RNAs from promoter-proximal RNA polymerase II.启动子近端 RNA 聚合酶 II 结合的小 RNA。
Cell. 2014 Feb 27;156(5):920-34. doi: 10.1016/j.cell.2014.01.041.
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Two independent transcription initiation codes overlap on vertebrate core promoters.两个独立的转录起始密码在脊椎动物核心启动子上重叠。
Nature. 2014 Mar 20;507(7492):381-385. doi: 10.1038/nature12974. Epub 2014 Feb 16.
10
Chromatin and DNA sequences in defining promoters for transcription initiation.染色质和DNA序列在确定转录起始的启动子方面的作用。
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