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设计一种具有最耐热碳酸酐酶(SspCA)的生化特性和最快(SazCA)酶活性的超级碳酸酐酶的初步尝试失败了。

A failed tentative to design a super carbonic anhydrase having the biochemical properties of the most thermostable CA (SspCA) and the fastest (SazCA) enzymes.

作者信息

De Luca Viviana, Del Prete Sonia, Carginale Vincenzo, Vullo Daniela, Supuran Claudiu T, Capasso Clemente

机构信息

a Istituto di Bioscienze e Biorisorse , CNR , Napoli , Italy and.

b DipartimentoNeurofarba , Università degliStudi di Firenze, Sezione di ScienzeFarmaceutiche, and Laboratorio di ChimicaBioinorganica, Polo Scientifico , Sesto Fiorentino, Florence , Italy.

出版信息

J Enzyme Inhib Med Chem. 2015 Dec;30(6):989-94. doi: 10.3109/14756366.2014.1002403. Epub 2015 Feb 16.

Abstract

Carbonic anhydrases (CAs, EC 4.2.1.1) catalyze a simple reaction in all life domains: the carbon dioxide hydration to bicarbonate and protons: CO2 + H2O → [Formula: see text] + H(+). Six different, genetically distinct CA families are known to date, the α-, β-, γ-, δ-, ζ- and η-CAs. Bacteria encode for CAs belong to the α-, β- and γ-classes. Recently, our groups investigated the presence of CAs in two bacteria belonging to the genus Sulfurihydrogenibium living in hot springs all over the world, at temperatures of up to 110 °C. The α-CAs from Sulfurihydrogenibium yellowstonense and Sulfurihydrogenibium azorense, denominated SspCA and SazCA, respectively, are highly thermostable, maintaining a good catalytic activity even after being heated for a prolonged period. Moreover, SazCA was to be the fastest CA known to date with a kcat value of 4.40 × 10(6) s(-1) and a kcat/KM value of 3.5 × 10(8) M(-1) s(-1). SspCA also showed a good catalytic activity for the same reaction, with a kcat value of 9.35 × 10(5) s(-1) and a kcat/KM value of 1.1 × 10(8) M(-1) s(-1), proving that the "extremo-α-CAs" are between the most effective CAs known to date. Here, we describe a failed tentative to obtain a super-CA, SupCA, by combining the amino acid sequence of SazCA and SspCA. To achieve this goal we introduced six His residues in N-terminal sequence of SspCA. However the obtained SupCA showed lower catalytic activity and thermostability compared to both extremophilic enzymes from which it has been designed. We rationalized the biochemical reasons of this failure, which may be useful to design enzymes with a better catalytic activity.

摘要

碳酸酐酶(CAs,EC 4.2.1.1)在所有生命域中催化一个简单反应:二氧化碳水合形成碳酸氢根和质子:CO2 + H2O → [公式:见原文] + H(+)。迄今为止,已知有六个不同的、基因上不同的CA家族,即α-、β-、γ-、δ-、ζ-和η-CAs。细菌编码的CAs属于α-、β-和γ-类。最近,我们的研究团队调查了世界各地温泉中两种属于嗜氢硫杆菌属的细菌中CAs的存在情况,这些细菌生活在高达110°C的温度下。来自黄石嗜氢硫杆菌和阿苏尔嗜氢硫杆菌的α-CAs,分别命名为SspCA和SazCA,具有高度的热稳定性,即使长时间加热后仍保持良好的催化活性。此外,SazCA是迄今为止已知最快的CA,其kcat值为4.40×10(6) s(-1),kcat/KM值为3.5×10(8) M(-1) s(-1)。SspCA对同一反应也表现出良好的催化活性,kcat值为9.35×10(5) s(-1),kcat/KM值为1.1×10(8) M(-1) s(-1),证明“极端α-CAs”是迄今为止已知最有效的CAs之一。在此,我们描述了一次尝试通过组合SazCA和SspCA的氨基酸序列来获得超级CA(SupCA)但失败的尝试。为实现这一目标,我们在SspCA的N端序列中引入了六个组氨酸残基。然而,与设计它所使用的两种嗜极端酶相比,所得的SupCA表现出较低的催化活性和热稳定性。我们对这次失败的生化原因进行了分析,这可能有助于设计具有更好催化活性的酶。

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