The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
Department of Life Sciences, Chalmers University of Technology, SE-41296 Gothenburg, Sweden.
Int J Mol Sci. 2024 May 28;25(11):5853. doi: 10.3390/ijms25115853.
The development of carbon capture and storage technologies has resulted in a rising interest in the use of carbonic anhydrases (CAs) for CO fixation at elevated temperatures. In this study, we chose to rationally engineer the α-CA (NtCA) from the thermophilic bacterium , which has been previously suggested to be thermostable by in silico studies. Using a combination of analyses with the DEEPDDG software and available structural knowledge, we selected residues in three regions, namely, the catalytic pocket, the dimeric interface and the surface, in order to increase thermostability and CO hydration activity. A total of 13 specific mutations, affecting seven amino acids, were assessed. Single, double and quadruple mutants were produced in and analyzed. The best-performing mutations that led to improvements in both activity and stability were D168K, a surface mutation, and R210L, a mutation in the dimeric interface. Apart from these, most mutants showed improved thermostability, with mutants R210K and N88K_R210L showing substantial improvements in activity, up to 11-fold. Molecular dynamics simulations, focusing particularly on residue fluctuations, conformational changes and hydrogen bond analysis, elucidated the structural changes imposed by the mutations. Successful engineering of NtCA provided valuable lessons for further engineering of α-CAs.
碳捕集和封存技术的发展使得人们对高温下使用碳酸酐酶(CA)固定 CO 产生了浓厚的兴趣。在这项研究中,我们选择了对嗜热菌的α-CA(NtCA)进行理性工程改造,之前的计算机研究表明它具有热稳定性。我们使用 DEEPDDG 软件和可用结构知识的组合分析,选择了三个区域的残基,即催化口袋、二聚体界面和表面,以提高热稳定性和 CO 水合活性。总共评估了 13 个特定的突变,影响了 7 个氨基酸。在 中产生了单、双和四突变体,并对其进行了分析。导致活性和稳定性都提高的最佳突变是 D168K,一个表面突变,和 R210L,一个二聚体界面突变。除此之外,大多数突变体显示出提高的热稳定性,突变体 R210K 和 N88K_R210L 的活性提高了 11 倍。分子动力学模拟,特别关注残基波动、构象变化和氢键分析,阐明了突变所引起的结构变化。对 NtCA 的成功工程改造为进一步的α-CA 工程改造提供了有价值的经验。