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一组保守的母体基因?来自软体动物转录组的见解。

A conserved set of maternal genes? Insights from a molluscan transcriptome.

作者信息

Liu M Maureen, Davey John W, Jackson Daniel J, Blaxter Mark L, Davison Angus

机构信息

School of Life Sciences, University of Nottingham, University Park, Nottingham, UK.

出版信息

Int J Dev Biol. 2014;58(6-8):501-11. doi: 10.1387/ijdb.140121ad.

DOI:10.1387/ijdb.140121ad
PMID:25690965
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4594767/
Abstract

The early animal embryo is entirely reliant on maternal gene products for a 'jump-start' that transforms a transcriptionally inactive embryo into a fully functioning zygote. Despite extensive work on model species, it has not been possible to perform a comprehensive comparison of maternally-provisioned transcripts across the Bilateria because of the absence of a suitable dataset from the Lophotrochozoa. As part of an ongoing effort to identify the maternal gene that determines left-right asymmetry in snails, we have generated transcriptome data from 1 to 2-cell and 32-cell pond snail (Lymnaea stagnalis) embryos. Here, we compare these data to maternal transcript datasets from other bilaterian metazoan groups, including representatives of the Ecydysozoa and Deuterostomia. We found that between 5 and 10% of all L. stagnalis maternal transcripts (300-400 genes) are also present in the equivalent arthropod (Drosophila melanogaster), nematode (Caenorhabditis elegans), urochordate (Ciona intestinalis) and chordate (Homo sapiens, Mus musculus, Danio rerio) datasets. While the majority of these conserved maternal transcripts ("COMATs") have housekeeping gene functions, they are a non-random subset of all housekeeping genes, with an overrepresentation of functions associated with nucleotide binding, protein degradation and activities associated with the cell cycle. We conclude that a conserved set of maternal transcripts and their associated functions may be a necessary starting point of early development in the Bilateria. For the wider community interested in discovering conservation of gene expression in early bilaterian development, the list of putative COMATs may be useful resource.

摘要

早期动物胚胎完全依赖母体基因产物来实现“快速启动”,即将转录不活跃的胚胎转变为功能完备的受精卵。尽管对模式生物进行了大量研究,但由于缺乏来自冠轮动物门的合适数据集,因此无法对两侧对称动物的母体提供的转录本进行全面比较。作为正在进行的确定蜗牛左右不对称性的母体基因研究工作的一部分,我们已经生成了1至2细胞期和大约32细胞期的池塘蜗牛(椎实螺)胚胎的转录组数据。在此,我们将这些数据与其他两侧对称后生动物类群的母体转录本数据集进行比较,这些类群包括蜕皮动物门和后口动物门的代表。我们发现,在所有椎实螺母体转录本(约300 - 400个基因)中,有5%至10%也存在于相应的节肢动物(黑腹果蝇)、线虫(秀丽隐杆线虫)、尾索动物(玻璃海鞘)和脊椎动物(智人、小家鼠、斑马鱼)的数据集中。虽然这些保守的母体转录本(“COMATs”)大多具有管家基因功能,但它们是所有管家基因中的一个非随机子集,与核苷酸结合、蛋白质降解以及细胞周期相关活动的功能过度富集。我们得出结论,一组保守的母体转录本及其相关功能可能是两侧对称动物早期发育的必要起点。对于更广泛的有兴趣发现早期两侧对称动物发育中基因表达保守性的群体而言,推定的COMATs列表可能是一个有用的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/f9a8e00dad9f/emss-65388-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/3a0d192c2403/emss-65388-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/2849d6d760d6/emss-65388-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/f9a8e00dad9f/emss-65388-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/3a0d192c2403/emss-65388-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/2849d6d760d6/emss-65388-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ad1/4594767/f9a8e00dad9f/emss-65388-f0003.jpg

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