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非平衡分子动力学模拟的局部动量约束

A localized momentum constraint for non-equilibrium molecular dynamics simulations.

作者信息

Smith E R, Heyes D M, Dini D, Zaki T A

机构信息

Department of Mechanical Engineering, Imperial College London, Exhibition Road, South Kensington, London SW7 2AZ, United Kingdom.

出版信息

J Chem Phys. 2015 Feb 21;142(7):074110. doi: 10.1063/1.4907880.

Abstract

A method which controls momentum evolution in a sub-region within a molecular dynamics simulation is derived from Gauss's principle of least constraint. The technique for localization is founded on the equations by Irving and Kirkwood [J. Chem. Phys. 18, 817 (1950)] expressed in a weak form according to the control volume (CV) procedure derived by Smith et al. [Phys. Rev. E. 85, 056705 (2012)]. A term for the advection of molecules appears in the derived constraint and is shown to be essential in order to exactly control the time evolution of momentum in the subvolume. The numerical procedure converges the total momentum in the CV to the target value to within machine precision in an iterative manner. The localized momentum constraint can prescribe essentially arbitrary flow fields in non-equilibrium molecular dynamics simulations. The methodology also forms a rigorous mathematical framework for introducing coupling constraints at the boundary between continuum and discrete systems. This functionality is demonstrated with a boundary-driven flow test case.

摘要

一种在分子动力学模拟中控制子区域内动量演化的方法源自高斯最小约束原理。定位技术基于欧文和柯克伍德[《化学物理杂志》18, 817 (1950)]的方程,该方程根据史密斯等人[《物理评论E》85, 056705 (2012)]推导的控制体积(CV)程序以弱形式表示。在推导的约束中出现了一个分子平流项,并且已表明该项对于精确控制子体积内动量的时间演化至关重要。数值程序以迭代方式将CV中的总动量收敛到机器精度范围内的目标值。局部动量约束可以在非平衡分子动力学模拟中规定基本任意的流场。该方法还为在连续系统和离散系统之间的边界处引入耦合约束形成了一个严格的数学框架。通过边界驱动流测试案例展示了此功能。

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