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环状RNA生物合成的调控

Regulation of circRNA biogenesis.

作者信息

Chen Ling-Ling, Yang Li

机构信息

a State Key Laboratory of Molecular Biology; Institute of Biochemistry and Cell Biology; Shanghai Institutes for Biological Sciences; Chinese Academy of Sciences ; Shanghai , China.

出版信息

RNA Biol. 2015;12(4):381-8. doi: 10.1080/15476286.2015.1020271.

Abstract

Unlike linear RNAs terminated with 5' caps and 3' tails, circular RNAs are characterized by covalently closed loop structures with neither 5' to 3' polarity nor polyadenylated tail. This intrinsic characteristic has led to the general under-estimation of the existence of circular RNAs in previous polyadenylated transcriptome analyses. With the advent of specific biochemical and computational approaches, a large number of circular RNAs from back-spliced exons (circRNAs) have been identified in various cell lines and across different species. Recent studies have uncovered that back-splicing requires canonical spliceosomal machinery and can be facilitated by both complementary sequences and specific protein factors. In this review, we highlight our current understanding of the regulation of circRNA biogenesis, including both the competition between splicing and back-splicing and the previously under-appreciated alternative circularization.

摘要

与具有5'帽和3'尾的线性RNA不同,环状RNA的特征是具有共价闭合的环状结构,既没有5'到3'的极性,也没有多聚腺苷酸化尾。这一内在特征导致在先前的多聚腺苷酸化转录组分析中,环状RNA的存在普遍被低估。随着特定生化和计算方法的出现,大量来自反向剪接外显子的环状RNA(circRNA)已在各种细胞系和不同物种中被鉴定出来。最近的研究发现,反向剪接需要典型的剪接体机制,并且互补序列和特定蛋白质因子都可以促进其发生。在这篇综述中,我们重点介绍了目前对circRNA生物合成调控的理解,包括剪接和反向剪接之间的竞争以及之前未被充分认识的可变环化。

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本文引用的文献

2
Exon-intron circular RNAs regulate transcription in the nucleus.
Nat Struct Mol Biol. 2015 Mar;22(3):256-64. doi: 10.1038/nsmb.2959. Epub 2015 Feb 9.
3
Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.
Cell Rep. 2015 Jan 13;10(2):170-7. doi: 10.1016/j.celrep.2014.12.019. Epub 2014 Dec 31.
4
5
Exon circularization requires canonical splice signals.
Cell Rep. 2015 Jan 6;10(1):103-11. doi: 10.1016/j.celrep.2014.12.002. Epub 2014 Dec 24.
6
Efficient backsplicing produces translatable circular mRNAs.
RNA. 2015 Feb;21(2):172-9. doi: 10.1261/rna.048272.114. Epub 2014 Dec 1.
7
Circular RNAs: diversity of form and function.
RNA. 2014 Dec;20(12):1829-42. doi: 10.1261/rna.047126.114.
8
Short intronic repeat sequences facilitate circular RNA production.
Genes Dev. 2014 Oct 15;28(20):2233-47. doi: 10.1101/gad.251926.114. Epub 2014 Oct 3.
9
Complementary sequence-mediated exon circularization.
Cell. 2014 Sep 25;159(1):134-147. doi: 10.1016/j.cell.2014.09.001. Epub 2014 Sep 18.
10
circRNA biogenesis competes with pre-mRNA splicing.
Mol Cell. 2014 Oct 2;56(1):55-66. doi: 10.1016/j.molcel.2014.08.019. Epub 2014 Sep 18.

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