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环状 RNA 剪接。

Circular RNA Splicing.

机构信息

University of Heidelberg, Heidelberg, Germany.

Clinic and Polyclinic for Cardiology, University Hospital Leipzig, Leipzig, Germany.

出版信息

Adv Exp Med Biol. 2018;1087:41-52. doi: 10.1007/978-981-13-1426-1_4.

DOI:10.1007/978-981-13-1426-1_4
PMID:30259356
Abstract

Circular RNAs (circRNAs) are covalently closed single-stranded RNA molecules derived from exons by alternative mRNA splicing. Circularization of single-stranded RNA molecules was already described in 1976 for viroids in plants. Since then several additional types of circular RNAs in many species have been described such as the circular single-stranded RNA genome of the hepatitis delta virus (HDV) or circular RNAs as products or intermediates of tRNA and rRNA maturation in archaea. CircRNAs are generally formed by covalent binding of the 5' site of an upstream exon with the 3' of the same or a downstream exon. Meanwhile, two different models of circRNA biogenesis have been described, the lariat or exon skipping model and the direct backsplicing model. In the lariat model, canonical splicing occurs before backsplicing, whereas in the direct backsplicing model, the circRNA is generated first. In this chapter, we will review the formation of circular RNAs and highlight the derivation of different types of circular RNAs.

摘要

环状 RNA(circRNAs)是通过选择性 mRNA 剪接从外显子衍生而来的共价闭合的单链 RNA 分子。1976 年就在植物类病毒中已经描述了单链 RNA 分子的环状化。从那时起,在许多物种中已经描述了几种额外类型的环状 RNA,例如乙型肝炎 delta 病毒(HDV)的环状单链 RNA 基因组,或作为古菌 tRNA 和 rRNA 成熟产物或中间产物的环状 RNA。环状 RNA 通常是通过上游外显子的 5' 位点与同一外显子或下游外显子的 3' 位点的共价结合形成的。同时,已经描述了两种不同的环状 RNA 生物发生模型,套索或外显子跳跃模型和直接反向剪接模型。在套索模型中,反向剪接之前发生规范剪接,而在直接反向剪接模型中,首先产生环状 RNA。在本章中,我们将回顾环状 RNA 的形成,并强调不同类型的环状 RNA 的衍生。

相似文献

1
Circular RNA Splicing.环状 RNA 剪接。
Adv Exp Med Biol. 2018;1087:41-52. doi: 10.1007/978-981-13-1426-1_4.
2
Circular RNAs: Unexpected outputs of many protein-coding genes.环状 RNA:许多蛋白质编码基因的意外产物。
RNA Biol. 2017 Aug 3;14(8):1007-1017. doi: 10.1080/15476286.2016.1227905. Epub 2016 Aug 29.
3
Circular RNAs: diversity of form and function.环状RNA:形式与功能的多样性
RNA. 2014 Dec;20(12):1829-42. doi: 10.1261/rna.047126.114.
4
Circular exonic RNAs: When RNA structure meets topology.环状外显子 RNA:当 RNA 结构遇到拓扑结构。
Biochim Biophys Acta Gene Regul Mech. 2019 Nov-Dec;1862(11-12):194384. doi: 10.1016/j.bbagrm.2019.05.002. Epub 2019 May 15.
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Regulation of Transcription by Circular RNAs.环状 RNA 对转录的调控
Adv Exp Med Biol. 2018;1087:81-94. doi: 10.1007/978-981-13-1426-1_7.
6
Efficient backsplicing produces translatable circular mRNAs.高效的反式拼接产生可翻译的环状 mRNA。
RNA. 2015 Feb;21(2):172-9. doi: 10.1261/rna.048272.114. Epub 2014 Dec 1.
7
Insights into circular RNA biology.环状 RNA 生物学研究进展
RNA Biol. 2017 Aug 3;14(8):1035-1045. doi: 10.1080/15476286.2016.1271524. Epub 2016 Dec 16.
8
Exon circularization requires canonical splice signals.外显子环化需要典型的剪接信号。
Cell Rep. 2015 Jan 6;10(1):103-11. doi: 10.1016/j.celrep.2014.12.002. Epub 2014 Dec 24.
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The Biogenesis, Functions, and Challenges of Circular RNAs.环状 RNA 的生成、功能和挑战。
Mol Cell. 2018 Aug 2;71(3):428-442. doi: 10.1016/j.molcel.2018.06.034. Epub 2018 Jul 26.
10
CircRNAs in Plants.环状 RNA 与植物
Adv Exp Med Biol. 2018;1087:329-343. doi: 10.1007/978-981-13-1426-1_26.

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Molecular basis of backsplicing regulation and its application to manipulate circRNA levels.反向剪接调控的分子基础及其在调控环形RNA水平中的应用。
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Circular RNAs modulate cell death in cardiovascular diseases.环状RNA在心血管疾病中调节细胞死亡。
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The role of circular RNA in immune response to tuberculosis and its potential as a biomarker and therapeutic target.环状RNA在结核病免疫反应中的作用及其作为生物标志物和治疗靶点的潜力。
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circ_0002970 promotes fibroblast-like synoviocytes invasion and the inflammatory response through Hippo/YAP signaling to induce CTGF/CCN1 expression in rheumatoid arthritis.环状RNA_0002970通过Hippo/YAP信号通路促进类风湿关节炎中滑膜成纤维样细胞的侵袭和炎症反应,从而诱导结缔组织生长因子/CCN1表达。
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Circular RNAs as a novel class of potential therapeutic and diagnostic biomarkers in reproductive biology/diseases.环状RNA作为生殖生物学/疾病中一类新型的潜在治疗和诊断生物标志物。
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