Viver Tomeu, Cifuentes Ana, Díaz Sara, Rodríguez-Valdecantos Gustavo, González Bernardo, Antón Josefa, Rosselló-Móra Ramon
Marine Microbiology Group, Department of Ecology and Marine Resources, Mediterranean Institute for Advanced Studies (IMEDEA, CSIC-UIB), Esporles, Spain.
Marine Microbiology Group, Department of Ecology and Marine Resources, Mediterranean Institute for Advanced Studies (IMEDEA, CSIC-UIB), Esporles, Spain.
Syst Appl Microbiol. 2015 Jun;38(4):266-75. doi: 10.1016/j.syapm.2015.02.002. Epub 2015 Feb 20.
The culturable fraction of aerobic, heterotrophic and extremely halophilic microbiota retrieved from sediment and brine samples of eight sampling sites in the Mediterranean, Canary Islands and Chile was studied by means of a tandem approach combining large-scale cultivation, MALDI-TOF MS targeting whole cell biomass, and phylogenetic reconstruction based on 16S rRNA gene analysis. The approach allowed the identification of more than 4200 strains and a comparison between different sampling sites. The results indicated that the method constituted an excellent tool for the discovery of taxonomic novelty. Four new genera and nine new species could be identified within the archaeal family Halobacteriaceae, as well as one new bacterial species, and a representative of Salinibacter ruber phylotype II, a group that had been refractory to isolation for the last fifteen years. Altogether, the results indicated that in order to provide better yields for the retrieval of novel taxa from the environment, performance of non-redundant environment sampling is recommended together with the screening of large sets of strains.
通过大规模培养、针对全细胞生物质的基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)以及基于16S rRNA基因分析的系统发育重建相结合的串联方法,研究了从地中海、加那利群岛和智利的八个采样点的沉积物和卤水样品中获取的需氧、异养和极端嗜盐微生物群的可培养部分。该方法能够鉴定出4200多个菌株,并对不同采样点进行比较。结果表明,该方法是发现分类学新物种的优秀工具。在古菌科盐杆菌科中可鉴定出四个新属和九个新物种,以及一个新细菌物种和红嗜盐菌II型菌株的一个代表,红嗜盐菌II型菌株在过去十五年一直难以分离。总体而言,结果表明,为了从环境中更好地获取新分类群,建议进行非冗余环境采样并筛选大量菌株。