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低温细菌病毒VR——一组小型但多样的大肠杆菌噬菌体。

Low-temperature bacterial viruses VR - a small but diverse group of E. coli phages.

作者信息

Kaliniene Laura, Zajančkauskaitė Aurelija, Šimoliūnas Eugenijus, Truncaitė Lidija, Meškys Rolandas

机构信息

Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University, Mokslininkų 12, 08662, Vilnius, Lithuania,

出版信息

Arch Virol. 2015 May;160(5):1367-70. doi: 10.1007/s00705-015-2388-0. Epub 2015 Mar 10.

Abstract

The complete genome sequences of four low-temperature Escherichia coli-specific tevenviruses, vb_EcoM-VR5, vb_EcoM-VR20, vb_EcoM-VR25 and vb_EcoM-VR26, were determined. Genomic comparisons including recently described genomes of vb_EcoM-VR7 and JS98 as well as phage T4 allowed the identification of two genetic groups that were consistent with defined host-range phenotypes. Group A included the broad-host-range phages vb_EcoM-VR5 and JS98, while group B included vb_EcoM-VR7, vb_EcoM-VR20, vb_EcoM-VR25 and vb_EcoM-VR26, which all had somewhat limited host ranges. All four sequenced phages had genomes that were similar in length (170 kb) and GC content (40 %), and, with the exception of vb_EcoM-VR5, at the nucleotide level, they were much more closely related to each other than either was to any other tevenvirus currently characterized. Nevertheless, the overall genome organization of vb_EcoM-VR5, vb_EcoM-VR20, vb_EcoM-VR25 and vb_EcoM-VR26 was comparable to that seen in tevenviruses.

摘要

测定了四种低温大肠杆菌特异性T偶数病毒vb_EcoM-VR5、vb_EcoM-VR20、vb_EcoM-VR25和vb_EcoM-VR26的全基因组序列。基因组比较包括最近描述的vb_EcoM-VR7和JS98的基因组以及噬菌体T4,从而确定了两个与确定的宿主范围表型一致的基因组群。A组包括广宿主范围噬菌体vb_EcoM-VR5和JS98,而B组包括vb_EcoM-VR7、vb_EcoM-VR20、vb_EcoM-VR25和vb_EcoM-VR26,它们的宿主范围都有些有限。所有四种测序噬菌体的基因组长度(约170 kb)和GC含量(约40%)相似,并且,除vb_EcoM-VR5外,在核苷酸水平上,它们彼此之间的关系比它们与目前已鉴定的任何其他T偶数病毒的关系更为密切。然而,vb_EcoM-VR5、vb_EcoM-VR20、vb_EcoM-VR25和vb_EcoM-VR26的总体基因组组织与T偶数病毒中的情况相当。

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