Xu Juntian, Chen Mianmian, He Lingchen, Zhang Shuqing, Ding Tianyun, Yao Huochun, Lu Chengping, Zhang Wei
College of Veterinary Medicine, Nanjing Agricultural University, Nanjing City, Jiangsu Province, China.
J Basic Microbiol. 2016 Apr;56(4):405-21. doi: 10.1002/jobm.201500440. Epub 2015 Dec 23.
Avian pathogenic Escherichia coli (APEC) causes colibacillosis in poultry, resulting in severe economic losses worldwide. Coliphages represent alternative antibacterial substitutes based on high lytic efficiency and few side-effects. However, the complete genome sequences information of APEC phages are limited, and knowledge of undesired genes and the narrow host range restrict their applications. In this study, we isolated a virulent phage QL01, with a relatively broad lytic spectrum (41 of 78 APEC strains). Transmission electron micrography showed it belonged to the family Myoviridae with an elongated head and a contractile tail. Whole genome sequencing revealed a linear double-stranded DNA (170,527 kb; GC content, 39.6%) with 275 possible ORFs. Comparative genome analysis revealed high homology between QL01 and other T4-like phages. However, it also showed some unique features, for example, ORF142 and ORF143, which encode IP9 and IP8, respectively, and may counteract host resistance only exist in a few T4-like phages such as IME08 and vB_EcoM_VR5. Furthermore, phage therapy in artificially infected ducks showed a 26.67% decrease in mortality compared with the untreated group. Our study indicates the potential antibacterial function of phage QL01 against APEC infections and highlights unique molecular features underlying the relatively broad host range.
禽致病性大肠杆菌(APEC)可导致家禽患大肠杆菌病,在全球范围内造成严重经济损失。噬菌体因其高裂解效率和低副作用而成为替代抗菌剂。然而,APEC噬菌体的全基因组序列信息有限,有害基因的存在以及宿主范围狭窄限制了它们的应用。在本研究中,我们分离出一种烈性噬菌体QL01,其裂解谱相对较宽(78株APEC菌株中的41株)。透射电子显微镜显示它属于肌尾噬菌体科,头部细长,尾部可收缩。全基因组测序揭示了一个线性双链DNA(170,527 kb;GC含量为39.6%),含有275个可能的开放阅读框。比较基因组分析显示QL01与其他T4样噬菌体具有高度同源性。然而,它也表现出一些独特特征,例如,分别编码IP9和IP8的ORF142和ORF143,可能仅在少数T4样噬菌体如IME08和vB_EcoM_VR5中存在以对抗宿主抗性。此外,人工感染鸭的噬菌体治疗显示死亡率比未治疗组降低了26.67%。我们的研究表明噬菌体QL01对APEC感染具有潜在抗菌功能,并突出了其相对较宽宿主范围背后的独特分子特征。