Jalali Saakshi, Kapoor Shruti, Sivadas Ambily, Bhartiya Deeksha, Scaria Vinod
GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110020, India and GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110020, India and.
GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110020, India and.
Bioinformatics. 2015 Jul 15;31(14):2241-51. doi: 10.1093/bioinformatics/btv148. Epub 2015 Mar 15.
Long non-coding RNAs (lncRNAs) form the largest class of non-protein coding genes in the human genome. While a small subset of well-characterized lncRNAs has demonstrated their significant role in diverse biological functions like chromatin modifications, post-transcriptional regulation, imprinting etc., the functional significance of a vast majority of them still remains an enigma. Increasing evidence of the implications of lncRNAs in various diseases including cancer and major developmental processes has further enhanced the need to gain mechanistic insights into the lncRNA functions. Here, we present a comprehensive review of the various computational approaches and tools available for the identification and annotation of long non-coding RNAs. We also discuss a conceptual roadmap to systematically explore the functional properties of the lncRNAs using computational approaches.
长链非编码RNA(lncRNAs)构成了人类基因组中最大的一类非蛋白质编码基因。虽然一小部分特征明确的lncRNAs已在多种生物学功能(如染色质修饰、转录后调控、印记等)中显示出其重要作用,但它们中的绝大多数的功能意义仍然是个谜。越来越多的证据表明lncRNAs参与包括癌症在内的各种疾病以及主要发育过程,这进一步增强了深入了解lncRNA功能机制的必要性。在此,我们全面综述了可用于长链非编码RNA鉴定和注释的各种计算方法和工具。我们还讨论了一个概念性路线图,以使用计算方法系统地探索lncRNAs的功能特性。