Jensen Kaj Frank, Hansen Michael Riis, Jensen Kristine Steen, Christoffersen Stig, Poulsen Jens-Christian Navarro, Mølgaard Anne, Kadziola Anders
†University of Copenhagen, Department of Biology, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.
‡University of Copenhagen, Department of Chemistry, Center of Crystallographic Studies, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
Biochemistry. 2015 Apr 14;54(14):2323-34. doi: 10.1021/bi501334m. Epub 2015 Mar 30.
The adenine phosphoribosyltransferase (APRTase) encoded by the open reading frame SSO2342 of Sulfolobus solfataricus P2 was subjected to crystallographic, kinetic, and ligand binding analyses. The enzyme forms dimers in solution and in the crystals, and binds one molecule of the reactants 5-phosphoribosyl-α-1-pyrophosphate (PRPP) and adenine or the product adenosine monophosphate (AMP) or the inhibitor adenosine diphosphate (ADP) in each active site. The individual subunit adopts an overall structure that resembles a 6-oxopurine phosphoribosyltransferase (PRTase) more than known APRTases implying that APRT functionality in Crenarchaeotae has its evolutionary origin in this family of PRTases. Only the N-terminal two-thirds of the polypeptide chain folds as a traditional type I PRTase with a five-stranded β-sheet surrounded by helices. The C-terminal third adopts an unusual three-helix bundle structure that together with the nucleobase-binding loop undergoes a conformational change upon binding of adenine and phosphate resulting in a slight contraction of the active site. The inhibitor ADP binds like the product AMP with both the α- and β-phosphates occupying the 5'-phosphoribosyl binding site. The enzyme shows activity over a wide pH range, and the kinetic and ligand binding properties depend on both pH and the presence/absence of phosphate in the buffers. A slow hydrolysis of PRPP to ribose 5-phosphate and pyrophosphate, catalyzed by the enzyme, may be facilitated by elements in the C-terminal three-helix bundle part of the protein.
对嗜热栖热菌P2的开放阅读框SSO2342编码的腺嘌呤磷酸核糖转移酶(APRTase)进行了晶体学、动力学和配体结合分析。该酶在溶液和晶体中均形成二聚体,且在每个活性位点结合一分子反应物5-磷酸核糖-α-1-焦磷酸(PRPP)和腺嘌呤或产物单磷酸腺苷(AMP)或抑制剂二磷酸腺苷(ADP)。单个亚基的整体结构与6-氧嘌呤磷酸核糖转移酶(PRTase)的相似性高于已知的APRTase,这意味着泉古菌中的APRT功能在进化上起源于该PRTase家族。只有多肽链的N端三分之二折叠成传统的I型PRTase,具有由螺旋包围的五链β-折叠。C端三分之一采用不寻常的三螺旋束结构,该结构与核碱基结合环在腺嘌呤和磷酸盐结合时发生构象变化,导致活性位点略有收缩。抑制剂ADP与产物AMP的结合方式类似,α-磷酸和β-磷酸均占据5'-磷酸核糖结合位点。该酶在较宽的pH范围内均有活性,其动力学和配体结合特性取决于pH以及缓冲液中磷酸盐的存在与否。由该酶催化的PRPP缓慢水解为5-磷酸核糖和焦磷酸的过程可能受到蛋白质C端三螺旋束部分元件的促进。