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基于第一性原理模拟的π堆积体系电荷迁移率的定量预测。

Quantitative prediction of charge mobilities of π-stacked systems by first-principles simulation.

机构信息

State Key Laboratory of Molecular Reaction Dynamics, Dalian National Laboratory for Clean Energy, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China.

出版信息

Nat Protoc. 2015 Apr;10(4):632-42. doi: 10.1038/nprot.2015.038. Epub 2015 Mar 26.

Abstract

This protocol is intended to provide chemists and physicists with a tool for predicting the charge carrier mobilities of π-stacked systems such as organic semiconductors and the DNA double helix. An experimentally determined crystal structure is required as a starting point. The simulation involves the following operations: (i) searching the crystal structure; (ii) selecting molecular monomers and dimers from the crystal structure; (iii) using density function theory (DFT) calculations to determine electronic coupling for dimers; (iv) using DFT calculations to determine self-reorganization energy of monomers; and (v) using a numerical calculation to determine the charge carrier mobility. For a single crystal structure consisting of medium-sized molecules, this protocol can be completed in ∼4 h. We have selected two case studies (a rubrene crystal and a DNA segment) as examples of how this procedure can be used.

摘要

本方案旨在为化学家与物理学家提供一种预测π堆积体系(如有机半导体和 DNA 双螺旋)载流子迁移率的工具。该方案需要以实验确定的晶体结构作为起点。模拟涉及以下操作:(i)搜索晶体结构;(ii)从晶体结构中选择分子单体和二聚体;(iii)使用密度泛函理论(DFT)计算确定二聚体的电子耦合;(iv)使用 DFT 计算确定单体的自重组能;以及(v)使用数值计算确定载流子迁移率。对于由中等大小分子组成的单晶结构,本方案大约需要 4 小时即可完成。我们选择了两个案例研究(芘晶体和 DNA 片段),作为说明此程序如何使用的示例。

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