Suppr超能文献

有点多了,这样可以吗?串联可变剪接产生的细微过剩。

It's a bit over, is that ok? The subtle surplus from tandem alternative splicing.

作者信息

Szafranski Karol, Kramer Marcel

机构信息

a Fritz Lipmann Institute - Leibniz Institute on Aging ; Jena , Germany.

出版信息

RNA Biol. 2015;12(2):115-22. doi: 10.1080/15476286.2015.1017210.

Abstract

Tandem alternative splice sites (TASS) form a defined class of alternative splicing and give rise to mRNA insertion/deletion variants with only small size differences. Previous work has confirmed evolutionary conservation of TASS elements while many cases show only low tissue specificity of isoform ratios. We pinpoint stochasticity and noise as important methodological issues for the dissection of TASS isoform patterns. Resolving such uncertainties, a recent report showed regulation in a cell culture system, with shifts of alternative splicing isoform ratios dependent on cell density. This novel type of regulation affects not only multiple TASS isoforms, but also other alternative splicing classes, in a concerted manner. Here, we discuss how specific regulatory network architectures may be realized through the novel regulation type and highlight the role of differential isoform functions as a key step in order to better understand the functional role of TASS.

摘要

串联可变剪接位点(TASS)构成了一类特定的可变剪接,会产生大小差异仅很小的mRNA插入/缺失变体。先前的研究已经证实了TASS元件的进化保守性,而许多情况显示异构体比例的组织特异性较低。我们指出随机性和噪声是剖析TASS异构体模式的重要方法学问题。为了解决这些不确定性,最近的一份报告显示了在细胞培养系统中的调控,可变剪接异构体比例的变化取决于细胞密度。这种新型调控不仅以协同方式影响多个TASS异构体,还影响其他可变剪接类别。在这里,我们讨论如何通过这种新型调控类型实现特定的调控网络架构,并强调差异异构体功能的作用是关键步骤,以便更好地理解TASS的功能作用。

相似文献

3
Alternative splicing regulation at tandem 3' splice sites.串联3'剪接位点处的可变剪接调控
Nucleic Acids Res. 2006 Jan 3;34(1):23-31. doi: 10.1093/nar/gkj408. Print 2006.

本文引用的文献

3
Evaluating statistical analysis models for RNA sequencing experiments.评估 RNA 测序实验的统计分析模型。
Front Genet. 2013 Sep 17;4:178. doi: 10.3389/fgene.2013.00178. eCollection 2013.
7
Spliceosome structure and function.剪接体结构与功能。
Cold Spring Harb Perspect Biol. 2011 Jul 1;3(7):a003707. doi: 10.1101/cshperspect.a003707.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验