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用于测量动力学同位素效应的重原子标记核苷酸。

Heavy atom labeled nucleotides for measurement of kinetic isotope effects.

作者信息

Weissman Benjamin P, Li Nan-Sheng, York Darrin, Harris Michael, Piccirilli Joseph A

机构信息

Department of Chemistry, University of Chicago, Chicago, IL, USA.

Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.

出版信息

Biochim Biophys Acta. 2015 Nov;1854(11):1737-45. doi: 10.1016/j.bbapap.2015.03.007. Epub 2015 Mar 27.

DOI:10.1016/j.bbapap.2015.03.007
PMID:25828952
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4584197/
Abstract

Experimental analysis of kinetic isotope effects represents an extremely powerful approach for gaining information about the transition state structure of complex reactions not available through other methodologies. The implementation of this approach to the study of nucleic acid chemistry requires the synthesis of nucleobases and nucleotides enriched for heavy isotopes at specific positions. In this review, we highlight current approaches to the synthesis of nucleic acids enriched site specifically for heavy oxygen and nitrogen and their application in heavy atom isotope effect studies. This article is part of a special issue titled: Enzyme Transition States from Theory and Experiment.

摘要

动力学同位素效应的实验分析是一种极为强大的方法,可用于获取有关复杂反应过渡态结构的信息,而这些信息是通过其他方法无法获得的。将这种方法应用于核酸化学研究需要合成在特定位置富集重同位素的核碱基和核苷酸。在这篇综述中,我们重点介绍了目前位点特异性富集重氧和重氮的核酸合成方法及其在重原子同位素效应研究中的应用。本文是名为《理论与实验中的酶过渡态》的特刊的一部分。

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本文引用的文献

1
A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.质子导线连接核糖体上氨酰基-tRNA 的容纳和肽键的形成。
Nat Struct Mol Biol. 2014 Sep;21(9):787-93. doi: 10.1038/nsmb.2871. Epub 2014 Aug 17.
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Crystal structure and mechanistic investigation of the twister ribozyme.扭体酶的晶体结构与作用机制研究。
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Synthetic methodologies in organic chemistry involving incorporation of [¹⁷O] and [¹⁸O] isotopes.
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Nucleic acid catalysis: metals, nucleobases, and other cofactors.核酸催化:金属、核碱基及其他辅助因子。
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Advances in kinetic isotope effect measurement techniques for enzyme mechanism study.酶机制研究中动力学同位素效应测量技术的进展。
Molecules. 2013 Aug 2;18(8):9278-92. doi: 10.3390/molecules18089278.
6
Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2'-O-transphosphorylation.核糖核酸酶 A 催化的 RNA 2'-O-转磷酸化过渡态的实验和计算分析。
Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13002-7. doi: 10.1073/pnas.1215086110. Epub 2013 Jul 22.
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General acid-base catalysis mediated by nucleobases in the hairpin ribozyme.碱基介导的发夹核酶中的酸碱催化作用。
J Am Chem Soc. 2012 Oct 10;134(40):16717-24. doi: 10.1021/ja3067429. Epub 2012 Sep 25.
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Synthesis of (6-(13)C)pyrimidine nucleotides as spin-labels for RNA dynamics.(6-(13)C)嘧啶核苷酸的合成为 RNA 动力学的自旋标记。
J Am Chem Soc. 2012 May 2;134(17):7558-69. doi: 10.1021/ja302148g. Epub 2012 Apr 19.
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A two-step chemical mechanism for ribosome-catalysed peptide bond formation.核糖体催化肽键形成的两步化学机制。
Nature. 2011 Jul 17;476(7359):236-9. doi: 10.1038/nature10248.
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Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes.酶的过渡态、过渡态类似物、动力学、热力学和寿命。
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