Cravens Shannen L, Schonhoft Joseph D, Rowland Meng M, Rodriguez Alyssa A, Anderson Breeana G, Stivers James T
Department of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, 725 North Wolfe Street, Baltimore, MD 21205-2185, USA.
Department of Chemistry and Biochemistry, The University of San Diego, 5998 Alcalá Park, San Diego, CA 92110, USA.
Nucleic Acids Res. 2015 Apr 30;43(8):4087-97. doi: 10.1093/nar/gkv301. Epub 2015 Apr 6.
Intracellular space is at a premium due to the high concentrations of biomolecules and is expected to have a fundamental effect on how large macromolecules move in the cell. Here, we report that crowded solutions promote intramolecular DNA translocation by two human DNA repair glycosylases. The crowding effect increases both the efficiency and average distance of DNA chain translocation by hindering escape of the enzymes to bulk solution. The increased contact time with the DNA chain provides for redundant damage patrolling within individual DNA chains at the expense of slowing the overall rate of damaged base removal from a population of molecules. The significant biological implication is that a crowded cellular environment could influence the mechanism of damage recognition as much as any property of the enzyme or DNA.
由于生物分子浓度很高,细胞内空间非常宝贵,预计这将对大分子在细胞内的移动方式产生根本性影响。在此,我们报告拥挤溶液可促进两种人类DNA修复糖基化酶的分子内DNA易位。拥挤效应通过阻碍酶扩散到本体溶液中,提高了DNA链易位的效率和平均距离。与DNA链增加的接触时间使得在单个DNA链内进行冗余损伤巡查成为可能,代价是减缓了从一群分子中去除受损碱基的总体速率。这一重要的生物学意义在于,拥挤的细胞环境对损伤识别机制的影响可能与酶或DNA的任何特性一样大。