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鲍曼不动杆菌新兴病原体的遗传和基因组分析资源

Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii.

作者信息

Gallagher Larry A, Ramage Elizabeth, Weiss Eli J, Radey Matthew, Hayden Hillary S, Held Kiara G, Huse Holly K, Zurawski Daniel V, Brittnacher Mitchell J, Manoil Colin

机构信息

Department of Genome Sciences, University of Washington, Seattle, Washington, USA

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

出版信息

J Bacteriol. 2015 Jun 15;197(12):2027-35. doi: 10.1128/JB.00131-15. Epub 2015 Apr 6.

Abstract

UNLABELLED

Acinetobacter baumannii is a Gram-negative bacterial pathogen notorious for causing serious nosocomial infections that resist antibiotic therapy. Research to identify factors responsible for the pathogen's success has been limited by the resources available for genome-scale experimental studies. This report describes the development of several such resources for A. baumannii strain AB5075, a recently characterized wound isolate that is multidrug resistant and displays robust virulence in animal models. We report the completion and annotation of the genome sequence, the construction of a comprehensive ordered transposon mutant library, the extension of high-coverage transposon mutant pool sequencing (Tn-seq) to the strain, and the identification of the genes essential for growth on nutrient-rich agar. These resources should facilitate large-scale genetic analysis of virulence, resistance, and other clinically relevant traits that make A. baumannii a formidable public health threat.

IMPORTANCE

Acinetobacter baumannii is one of six bacterial pathogens primarily responsible for antibiotic-resistant infections that have become the scourge of health care facilities worldwide. Eliminating such infections requires a deeper understanding of the factors that enable the pathogen to persist in hospital environments, establish infections, and resist antibiotics. We present a set of resources that should accelerate genome-scale genetic characterization of these traits for a reference isolate of A. baumannii that is highly virulent and representative of current outbreak strains.

摘要

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鲍曼不动杆菌是一种革兰氏阴性细菌病原体,以引起严重的医院感染且对抗生素治疗具有抗性而臭名昭著。由于可用于基因组规模实验研究的资源有限,确定导致该病原体成功的因素的研究受到了限制。本报告描述了针对鲍曼不动杆菌菌株AB5075开发的几种此类资源,AB5075是一种最近鉴定出的伤口分离株,具有多重耐药性且在动物模型中表现出强大的毒力。我们报告了基因组序列的完成和注释、全面有序转座子突变体文库的构建、将高覆盖率转座子突变体库测序(Tn-seq)扩展到该菌株,以及鉴定在富含营养的琼脂上生长所必需的基因。这些资源应有助于对毒力、抗性和其他使鲍曼不动杆菌成为严重公共卫生威胁的临床相关性状进行大规模遗传分析。

重要性

鲍曼不动杆菌是主要导致抗生素耐药性感染的六种细菌病原体之一,这些感染已成为全球医疗机构的一大祸害。消除此类感染需要更深入地了解使该病原体在医院环境中持续存在、引发感染并抵抗抗生素的因素。我们提供了一组资源,这些资源应能加速对一种鲍曼不动杆菌参考分离株的这些性状进行基因组规模的遗传表征,该分离株具有高毒力且代表当前的暴发菌株。

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