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细菌菌株间和菌株内的多样性仍然是(现实中)被忽视的重大问题。

Inter- and intra-bacterial strain diversity remains the "elephant in the (living) room".

作者信息

Valcek Adam, Kröger Carsten, de Dios Rubén, McCarthy Ronan R, Coenye Tom, Trent M Stephen, Karah Nabil, Uhlin Bernt Eric, Classen Annika Y, Higgins Paul G, Ebersberger Ingo, Laaberki Maria-Halima, Charpentier Xavier, Visca Paolo, Rather Philip N, Van der Henst Charles

机构信息

Microbial Resistance and Drug Discovery, VIB-VUB Center for Structural Biology, VIB, Flanders Institute for Biotechnology, Brussels, Belgium.

Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels, Belgium.

出版信息

NPJ Antimicrob Resist. 2025 Jul 25;3(1):67. doi: 10.1038/s44259-025-00138-8.

Abstract

Acinetobacter baumannii is an opportunistic Gram-negative bacterial pathogen responsible for severe nosocomial infections worldwide. Resistance to last-resort antibiotics causes A. baumannii to be ranked as a top priority for the research and development of new antibiotics by the WHO and an urgent threat to public health by the CDC. It is also a member of the ESKAPE group comprising the most problematic antibiotic-resistant nosocomial pathogens. Resistance towards desiccation, disinfectants, reactive oxygen species, and the host immune system helps A. baumannii thrive in hospital settings and infect individuals compromised by lines, tubes, and indwelling devices. A. baumannii displays extensive genomic heterogeneity, yet recent studies show that this level of plasticity is also prevalent in lab strains widely used to study A. baumannii biology. Successive subculturing of widely used strains and spontaneous genetic variations results in significantly altered genotypes and phenotypes, often not recognized by the scientific community. In addition, the current strain designation methods do not allow efficient communication about such differences. Even presumably identical strains from established culture collections have been found to demonstrate genetic heterogeneity. The "elephant in the (living) room" refers to the risk but also the potential of the bi-partite problem concerning the high diversity amongst A. baumannii isolates (inter-strain variability), and the universal issue of microevolution (intra-strain variability). This is generally ignored as it is not referenced adequately in scientific publications. We aim to raise awareness about the current issues and the problematic consequences generated by intra- and inter-strain diversity based on modern examples of A. baumannii isolates. Therefore, this review provides cases of broadly used A. baumannii strains and their genetic and phenotypic differences.

摘要

鲍曼不动杆菌是一种机会性革兰氏阴性细菌病原体,在全球范围内导致严重的医院感染。对最后手段抗生素的耐药性使鲍曼不动杆菌被世界卫生组织列为新抗生素研发的首要重点,被美国疾病控制与预防中心视为对公共卫生的紧迫威胁。它也是ESKAPE组的成员之一,该组包含最具问题的耐抗生素医院病原体。对干燥、消毒剂、活性氧和宿主免疫系统的抗性有助于鲍曼不动杆菌在医院环境中繁衍生息,并感染因线路、导管和留置装置而身体虚弱的个体。鲍曼不动杆菌表现出广泛的基因组异质性,但最近的研究表明,这种可塑性水平在广泛用于研究鲍曼不动杆菌生物学的实验室菌株中也很普遍。广泛使用的菌株连续传代培养和自发的基因变异会导致基因型和表型发生显著改变,而科学界往往并未认识到这一点。此外,目前的菌株命名方法无法有效地传达此类差异。即使是来自既定培养物保藏中心的假定相同的菌株,也已被发现存在遗传异质性。“(活)房间里的大象”既指鲍曼不动杆菌分离株之间高度多样性(菌株间变异性)这一双重问题所带来的风险,也指其潜力,同时还指微观进化这一普遍问题(菌株内变异性)。由于在科学出版物中对此提及不足,这一情况通常被忽视。我们旨在基于鲍曼不动杆菌分离株的现代实例,提高人们对当前问题以及菌株内和菌株间多样性所产生的问题后果的认识。因此,本综述提供了广泛使用的鲍曼不动杆菌菌株及其遗传和表型差异的案例。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfb6/12297434/92ff6d55a435/44259_2025_138_Fig1_HTML.jpg

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