• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

黑腹果蝇头部的X染色体和常染色体剂量反应

X Chromosome and Autosome Dosage Responses in Drosophila melanogaster Heads.

作者信息

Chen Zhen-Xia, Oliver Brian

机构信息

Section of Developmental Genomics, Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892.

Section of Developmental Genomics, Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892

出版信息

G3 (Bethesda). 2015 Apr 7;5(6):1057-63. doi: 10.1534/g3.115.017632.

DOI:10.1534/g3.115.017632
PMID:25850426
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4478536/
Abstract

X chromosome dosage compensation is required for male viability in Drosophila. Dosage compensation relative to autosomes is two-fold, but this is likely to be due to a combination of homeostatic gene-by-gene regulation and chromosome-wide regulation. We have baseline values for gene-by-gene dosage compensation on autosomes, but not for the X chromosome. Given the evolutionary history of sex chromosomes, these baseline values could differ. We used a series of deficiencies on the X and autosomes, along with mutations in the sex-determination gene transformer-2, to carefully measure the sex-independent X-chromosome response to gene dosage in adult heads by RNA sequencing. We observed modest and indistinguishable dosage compensation for both X chromosome and autosome genes, suggesting that the X chromosome is neither inherently more robust nor sensitive to dosage change.

摘要

在果蝇中,X染色体剂量补偿是雄性生存所必需的。相对于常染色体,剂量补偿是两倍,但这可能是由于基因稳态调节和全染色体调节共同作用的结果。我们有常染色体上逐个基因剂量补偿的基线值,但X染色体没有。鉴于性染色体的进化历史,这些基线值可能不同。我们利用X染色体和常染色体上的一系列缺失,以及性别决定基因transformer-2中的突变,通过RNA测序仔细测量了成年果蝇头部中X染色体对基因剂量的性别独立反应。我们观察到X染色体基因和常染色体基因的剂量补偿适度且无明显差异,这表明X染色体对剂量变化既不是天生更具抗性也不是更敏感。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/92aeb9df535f/1057f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/5ae26731ff8d/1057f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/65a578b1dc4e/1057f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/92aeb9df535f/1057f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/5ae26731ff8d/1057f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/65a578b1dc4e/1057f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d084/4478536/92aeb9df535f/1057f3.jpg

相似文献

1
X Chromosome and Autosome Dosage Responses in Drosophila melanogaster Heads.黑腹果蝇头部的X染色体和常染色体剂量反应
G3 (Bethesda). 2015 Apr 7;5(6):1057-63. doi: 10.1534/g3.115.017632.
2
Non-canonical Drosophila X chromosome dosage compensation and repressive topologically associated domains.非规范果蝇 X 染色体剂量补偿和抑制性拓扑关联域。
Epigenetics Chromatin. 2018 Oct 24;11(1):62. doi: 10.1186/s13072-018-0232-y.
3
Variation in the X:Autosome Distribution of Male-Biased Genes among Drosophila melanogaster Tissues and Its Relationship with Dosage Compensation.黑腹果蝇组织中雄性偏好基因的X染色体与常染色体分布差异及其与剂量补偿的关系
Genome Biol Evol. 2015 Jun 24;7(7):1960-71. doi: 10.1093/gbe/evv117.
4
X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila.果蝇中通过增强转录延伸实现 X 染色体剂量补偿。
Nature. 2011 Mar 3;471(7336):115-8. doi: 10.1038/nature09757.
5
Evolution of dosage compensation in Diptera: the gene maleless implements dosage compensation in Drosophila (Brachycera suborder) but its homolog in Sciara (Nematocera suborder) appears to play no role in dosage compensation.双翅目剂量补偿的进化:“无雄性”基因在果蝇(短角亚目)中实现剂量补偿,但其在蕈蚊(长角亚目)中的同源基因似乎在剂量补偿中不起作用。
Genetics. 2000 Dec;156(4):1853-65. doi: 10.1093/genetics/156.4.1853.
6
The Influence of Chromosomal Environment on X-Linked Gene Expression in Drosophila melanogaster.果蝇 X 连锁基因表达的染色体环境影响。
Genome Biol Evol. 2020 Dec 6;12(12):2391-2402. doi: 10.1093/gbe/evaa227.
7
Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura.在果蝇拟暗果蝇中,组织和阶段依赖性的新 X 染色体剂量补偿。
Mol Biol Evol. 2014 Mar;31(3):614-24. doi: 10.1093/molbev/mst239. Epub 2013 Dec 3.
8
Parallel Universes for Models of X Chromosome Dosage Compensation in Drosophila: A Review.果蝇X染色体剂量补偿模型中的平行宇宙:综述
Cytogenet Genome Res. 2016;148(1):52-67. doi: 10.1159/000445924. Epub 2016 May 12.
9
The Effect of Hybridization on Dosage Compensation in Member Species of the Anopheles gambiae Species Complex.杂交对冈比亚按蚊复合体成员种剂量补偿的影响。
Genome Biol Evol. 2018 Jul 1;10(7):1663-1672. doi: 10.1093/gbe/evy108.
10
Drosophila maleless gene counteracts X global aneuploid effects in males.果蝇无雄性基因可抵消雄性中X染色体整体非整倍体效应。
FEBS J. 2016 Sep;283(18):3457-70. doi: 10.1111/febs.13818. Epub 2016 Sep 9.

引用本文的文献

1
SGCP: a spectral self-learning method for clustering genes in co-expression networks.SGCP:一种用于共表达网络中基因聚类的光谱自学习方法。
BMC Bioinformatics. 2024 Jul 2;25(1):230. doi: 10.1186/s12859-024-05848-w.
2
Monosomy X in Female Mice Influences the Regional Formation and Augments the Severity of Angiotensin II-Induced Aortopathies.X 单体性小鼠雌性影响区域性形成并加重血管紧张素 II 诱导的主动脉病变的严重程度。
Arterioscler Thromb Vasc Biol. 2021 Jan;41(1):269-283. doi: 10.1161/ATVBAHA.120.314407. Epub 2020 Oct 15.
3
Skewed X-Chromosome Inactivation and Compensatory Upregulation of Escape Genes Precludes Major Clinical Symptoms in a Female With a Large Xq Deletion.

本文引用的文献

1
Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes.果蝇双性转录因子靶基因的性别和组织特异性功能。
Dev Cell. 2014 Dec 22;31(6):761-73. doi: 10.1016/j.devcel.2014.11.021.
2
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.使用DESeq2对RNA测序数据的倍数变化和离散度进行适度估计。
Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8.
3
DNA copy number evolution in Drosophila cell lines.果蝇细胞系中的DNA拷贝数进化
X染色体失活倾斜和逃避基因的代偿性上调可避免一名Xq大片段缺失女性出现主要临床症状。
Front Genet. 2020 Mar 4;11:101. doi: 10.3389/fgene.2020.00101. eCollection 2020.
4
Anti-masculinization induced by aromatase inhibitors in adult female zebrafish.芳构酶抑制剂诱导成年雌性斑马鱼的去雄性化。
BMC Genomics. 2020 Jan 7;21(1):22. doi: 10.1186/s12864-019-6437-z.
5
MAPCap allows high-resolution detection and differential expression analysis of transcription start sites.MAPCap 允许高分辨率检测和转录起始位点的差异表达分析。
Nat Commun. 2019 Jul 30;10(1):3219. doi: 10.1038/s41467-019-11115-x.
6
Heightened condition-dependence of the sexual transcriptome as a function of genetic quality in Drosophila melanogaster head tissue.遗传质量影响果蝇头部组织中性转录组的条件依赖性增强。
Proc Biol Sci. 2019 Jul 10;286(1906):20190819. doi: 10.1098/rspb.2019.0819.
7
RNA-on-X 1 and 2 in Drosophila melanogaster fulfill separate functions in dosage compensation.果蝇中的 RNA-on-X1 和 RNA-on-X2 在剂量补偿中发挥着不同的功能。
PLoS Genet. 2018 Dec 10;14(12):e1007842. doi: 10.1371/journal.pgen.1007842. eCollection 2018 Dec.
8
Non-canonical Drosophila X chromosome dosage compensation and repressive topologically associated domains.非规范果蝇 X 染色体剂量补偿和抑制性拓扑关联域。
Epigenetics Chromatin. 2018 Oct 24;11(1):62. doi: 10.1186/s13072-018-0232-y.
9
Dosage-Dependent Expression Variation Suppressed on the Male Chromosome.雄性染色体上剂量依赖性表达变异受到抑制。
G3 (Bethesda). 2018 Feb 2;8(2):587-598. doi: 10.1534/g3.117.300400.
10
Dosage Compensation in Drosophila-a Model for the Coordinate Regulation of Transcription.果蝇中的剂量补偿——转录协同调控的模型
Genetics. 2016 Oct;204(2):435-450. doi: 10.1534/genetics.115.185108.
Genome Biol. 2014 Aug 28;15(8):R70. doi: 10.1186/gb-2014-15-8-r70.
4
HTSeq--a Python framework to work with high-throughput sequencing data.HTSeq——一个用于处理高通量测序数据的Python框架。
Bioinformatics. 2015 Jan 15;31(2):166-9. doi: 10.1093/bioinformatics/btu638. Epub 2014 Sep 25.
5
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.RNA测序与微阵列数据之间的一致性取决于化学处理和转录本丰度。
Nat Biotechnol. 2014 Sep;32(9):926-32. doi: 10.1038/nbt.3001. Epub 2014 Aug 24.
6
Transcriptional effects of gene dose reduction.基因剂量减少的转录效应。
Biol Sex Differ. 2014 Mar 3;5(1):5. doi: 10.1186/2042-6410-5-5.
7
Male X-linked genes in Drosophila melanogaster are compensated independently of the Male-Specific Lethal complex.果蝇中的 X 连锁雄性基因独立于雄性特异性致死复合物得到补偿。
Epigenetics Chromatin. 2013 Oct 26;6(1):35. doi: 10.1186/1756-8935-6-35.
8
FlyBase 102--advanced approaches to interrogating FlyBase.FlyBase 102--高级方法探索 FlyBase。
Nucleic Acids Res. 2014 Jan;42(Database issue):D780-8. doi: 10.1093/nar/gkt1092. Epub 2013 Nov 13.
9
Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).利用剪接分析试剂盒(Spanki)对果蝇头部 RNA-Seq 数据进行事后过滤的 RNA 剪接分析零模型设计。
BMC Bioinformatics. 2013 Nov 9;14:320. doi: 10.1186/1471-2105-14-320.
10
Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila.非整倍体对性染色体和具有性别偏向表达的基因在果蝇中的差异影响。
Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16514-9. doi: 10.1073/pnas.1316041110. Epub 2013 Sep 23.