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巴西圣彼得与圣保罗海洋群岛中广泛分布的共生生物的潜在代谢策略。

Potential metabolic strategies of widely distributed holobionts in the oceanic archipelago of St Peter and St Paul (Brazil).

作者信息

Rua Cintia P J, Gregoracci Gustavo B, Santos Eidy O, Soares Ana Carolina, Francini-Filho Ronaldo B, Thompson Fabiano

机构信息

Av. Carlos Chagas Filho, s/nº - CCS - Instituto de Biologia, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, RJ, CEP 21941-599, Brazil.

Av. Alm. Saldanha da Gama, 89 - Departamento de Ciências do Mar, Universidade Federal de São Paulo (UNIFESP), Santos, CEP 11030-400, Brazil.

出版信息

FEMS Microbiol Ecol. 2015 Jun;91(6). doi: 10.1093/femsec/fiv043. Epub 2015 Apr 9.

Abstract

Sponges are one of the most complex symbiotic communities and while the taxonomic composition of associated microbes has been determined, the biggest challenge now is to uncover their functional role in symbiosis. We investigated the microbiota of two widely distributed sponge species, regarding both their taxonomic composition and their functional roles. Samples of Didiscus oxeata and Scopalina ruetzleri were collected in the oceanic archipelago of St Peter and St Paul and analysed through metagenomics. Sequences generated by 454 pyrosequencing and Ion Torrent were taxonomically and functionally annotated on the MG-RAST server using the GenBank and SEED databases, respectively. Both communities exhibit equivalence in core functions, interestingly played by the most abundant taxa in each community. Conversely, the microbial communities differ in composition, taxonomic diversity and potential metabolic strategies. Functional annotation indirectly suggests differences in preferential pathways of carbon, nitrogen and sulphur metabolisms, which may indicate different metabolic strategies.

摘要

海绵是最复杂的共生群落之一,虽然相关微生物的分类组成已经确定,但目前最大的挑战是揭示它们在共生中的功能作用。我们研究了两种广泛分布的海绵物种的微生物群,涉及它们的分类组成和功能作用。在圣彼得和圣保罗海洋群岛采集了奥氏盘海绵(Didiscus oxeata)和鲁氏斯科普海绵(Scopalina ruetzleri)的样本,并通过宏基因组学进行分析。分别使用GenBank和SEED数据库,在MG-RAST服务器上对454焦磷酸测序和离子激流测序产生的序列进行分类和功能注释。两个群落的核心功能表现出等效性,有趣的是,这些功能由每个群落中最丰富的分类群发挥。相反,微生物群落的组成、分类多样性和潜在代谢策略存在差异。功能注释间接表明了碳、氮和硫代谢优先途径的差异,这可能表明不同的代谢策略。

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