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一种新型 Chromatiales 细菌是多种海洋海绵中潜在的硫化物氧化剂。

A novel Chromatiales bacterium is a potential sulfide oxidizer in multiple orders of marine sponges.

机构信息

School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel Aviv, Israel.

Earth and Planetary Science, 369 McCone Hall, University of California, Berkeley, CA, USA.

出版信息

Environ Microbiol. 2018 Feb;20(2):800-814. doi: 10.1111/1462-2920.14013. Epub 2017 Dec 15.

Abstract

Sponges are benthic filter feeders that play pivotal roles in coupling benthic-pelagic processes in the oceans that involve transformation of dissolved and particulate organic carbon and nitrogen into biomass. While the contribution of sponge holobionts to the nitrogen cycle has been recognized in past years, their importance in the sulfur cycle, both oceanic and physiological, has only recently gained attention. Sponges in general, and Theonella swinhoei in particular, harbour a multitude of associated microorganisms that could affect sulfur cycling within the holobiont. We reconstructed the genome of a Chromatiales (class Gammaproteobacteria) bacterium from a metagenomic sequence dataset of a T. swinhoei-associated microbial community. This relatively abundant bacterium has the metabolic capability to oxidize sulfide yet displays reduced metabolic potential suggestive of its lifestyle as an obligatory symbiont. This bacterium was detected in multiple sponge orders, according to similarities in key genes such as 16S rRNA and polyketide synthase genes. Due to its sulfide oxidation metabolism and occurrence in many members of the Porifera phylum, we suggest naming the newly described taxon Candidatus Porisulfidus.

摘要

海绵是底栖滤食动物,在海洋中发挥着至关重要的作用,它们将溶解的和颗粒有机碳和氮转化为生物量,从而连接底栖和浮游生物过程。虽然过去几年已经认识到海绵共生体对氮循环的贡献,但它们在海洋和生理硫循环中的重要性最近才引起关注。一般来说,海绵,特别是 Theonella swinhoei,拥有多种相关的微生物,这些微生物可能会影响共生体内部的硫循环。我们从 T. swinhoei 相关微生物群落的宏基因组序列数据集中重建了一个 Chromatiales(γ变形菌纲)细菌的基因组。这种相对丰富的细菌具有氧化硫化物的代谢能力,但显示出降低的代谢潜力,表明其作为专性共生体的生活方式。根据 16S rRNA 和聚酮合酶基因等关键基因的相似性,这种细菌在多个海绵目中都有检测到。由于其硫化物氧化代谢和在多孔动物门的许多成员中的存在,我们建议将新描述的分类群命名为候选 Porisulfidus。

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