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检测内罗尔牛背最长肌矿物质含量的数量性状基因座。

Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle.

机构信息

Department of Genetics and Evolution, Federal University of Sao Carlos, São Carlos, SP, Brazil.

Division of Animal Sciences, University of Missouri, Columbia, MO, USA.

出版信息

Genet Sel Evol. 2015 Mar 11;47(1):15. doi: 10.1186/s12711-014-0083-3.

Abstract

BACKGROUND

Beef cattle require dietary minerals for optimal health, production and reproduction. Concentrations of minerals in tissues are at least partly genetically determined. Mapping genomic regions that affect the mineral content of bovine longissimus dorsi muscle can contribute to the identification of genes that control mineral balance, transportation, absorption and excretion and that could be associated to metabolic disorders.

METHODS

We applied a genome-wide association strategy and genotyped 373 Nelore steers from 34 half-sib families with the Illumina BovineHD BeadChip. Genome-wide association analysis was performed for mineral content of longissimus dorsi muscle using a Bayesian approach implemented in the GenSel software.

RESULTS

Muscle mineral content in Bos indicus cattle was moderately heritable, with estimates ranging from 0.29 to 0.36. Our results suggest that variation in mineral content is influenced by numerous small-effect QTL (quantitative trait loci) but a large-effect QTL that explained 6.5% of the additive genetic variance in iron content was detected at 72 Mb on bovine chromosome 12. Most of the candidate genes present in the QTL regions for mineral content were involved in signal transduction, signaling pathways via integral (also called intrinsic) membrane proteins, transcription regulation or metal ion binding.

CONCLUSIONS

This study identified QTL and candidate genes that affect the mineral content of skeletal muscle. Our findings provide the first step towards understanding the molecular basis of mineral balance in bovine muscle and can also serve as a basis for the study of mineral balance in other organisms.

摘要

背景

肉牛需要膳食矿物质才能保持最佳健康、生产和繁殖。组织中的矿物质浓度至少部分是由遗传决定的。绘制影响牛背最长肌矿物质含量的基因组区域图谱,可以帮助鉴定控制矿物质平衡、运输、吸收和排泄的基因,并可能与代谢紊乱有关。

方法

我们应用全基因组关联策略,对 34 个半同胞家系中的 373 头尼洛利牛进行了 Illumina BovineHD BeadChip 基因分型。使用 GenSel 软件中的贝叶斯方法对背最长肌矿物质含量进行全基因组关联分析。

结果

印度野牛牛的肌肉矿物质含量具有中度遗传力,估计值范围为 0.29 至 0.36。我们的结果表明,矿物质含量的变化受许多微效 QTL(数量性状位点)影响,但在牛 12 号染色体 72Mb 处检测到一个解释铁含量加性遗传变异 6.5%的大效 QTL。在矿物质含量 QTL 区域中存在的大多数候选基因参与信号转导、通过整膜蛋白(也称为内在膜蛋白)的信号通路、转录调控或金属离子结合。

结论

本研究鉴定了影响骨骼肌矿物质含量的 QTL 和候选基因。我们的研究结果为理解牛肌肉矿物质平衡的分子基础提供了第一步,也可以为其他生物体的矿物质平衡研究提供基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f8e/4355494/828ad8ec2a2e/12711_2014_83_Fig1_HTML.jpg

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