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美洲柳树(柳属,杨柳科)的系统发育关系。

Phylogenetic relationships of American willows (Salix L., Salicaceae).

作者信息

Lauron-Moreau Aurélien, Pitre Frédéric E, Argus George W, Labrecque Michel, Brouillet Luc

机构信息

Institut de recherche en biologie végétale, Université de Montréal, Montréal, QC, Canada.

Canadian Museum of Nature, Ottawa, Canada.

出版信息

PLoS One. 2015 Apr 16;10(4):e0121965. doi: 10.1371/journal.pone.0121965. eCollection 2015.

DOI:10.1371/journal.pone.0121965
PMID:25880993
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4399884/
Abstract

Salix L. is the largest genus in the family Salicaceae (450 species). Several classifications have been published, but taxonomic subdivision has been under continuous revision. Our goal is to establish the phylogenetic structure of the genus using molecular data on all American willows, using three DNA markers. This complete phylogeny of American willows allows us to propose a biogeographic framework for the evolution of the genus. Material was obtained for the 122 native and introduced willow species of America. Sequences were obtained from the ITS (ribosomal nuclear DNA) and two plastid regions, matK and rbcL. Phylogenetic analyses (parsimony, maximum likelihood, Bayesian inference) were performed on the data. Geographic distribution was mapped onto the tree. The species tree provides strong support for a division of the genus into two subgenera, Salix and Vetrix. Subgenus Salix comprises temperate species from the Americas and Asia, and their disjunction may result from Tertiary events. Subgenus Vetrix is composed of boreo-arctic species of the Northern Hemisphere and their radiation may coincide with the Quaternary glaciations. Sixteen species have ambiguous positions; genetic diversity is lower in subg. Vetrix. A molecular phylogeny of all species of American willows has been inferred. It needs to be tested and further resolved using other molecular data. Nonetheless, the genus clearly has two clades that have distinct biogeographic patterns.

摘要

柳属(Salix L.)是杨柳科中最大的属(有450个物种)。已经发表了几种分类法,但分类细分一直在不断修订。我们的目标是利用所有美洲柳树的分子数据,使用三种DNA标记来建立该属的系统发育结构。这一完整的美洲柳树系统发育图使我们能够为该属的进化提出一个生物地理框架。获取了美洲122种原生和引入柳树物种的材料。序列取自ITS(核糖体核DNA)以及两个质体区域matK和rbcL。对数据进行了系统发育分析(简约法、最大似然法、贝叶斯推断)。将地理分布绘制到树上。物种树为将该属划分为两个亚属,即柳亚属(Salix)和紫柳亚属(Vetrix)提供了有力支持。柳亚属包括来自美洲和亚洲的温带物种,它们的间断分布可能是第三纪事件导致的。紫柳亚属由北半球的寒北极物种组成,它们的辐射可能与第四纪冰川作用同时发生。16个物种的位置不明确;紫柳亚属的遗传多样性较低。已经推断出了所有美洲柳树物种的分子系统发育图。需要使用其他分子数据对其进行检验并进一步解析。尽管如此,该属显然有两个具有不同生物地理模式的进化枝。

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本文引用的文献

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Microsatellite Markers of Willow Species and Characterization of 11 Polymorphic Microsatellites for Salix eriocephala (Salicaceae), a Potential Native Species for Biomass Production in Canada.柳树物种的微卫星标记以及加拿大生物质生产潜在本土物种毛头柳(杨柳科)11个多态性微卫星的特征分析
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Understanding the spectacular failure of DNA barcoding in willows (Salix): does this result from a trans-specific selective sweep?理解 DNA 条形码在柳树(柳属)中的惊人失败:这是否是由于跨种特异性的选择清除造成的?
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柽柳属 15 号染色体的雄性异配性别决定系统揭示了柽柳属中祖先雄性异配性和随后的转化事件。
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Sci Rep. 2022 Oct 14;12(1):17254. doi: 10.1038/s41598-022-20498-9.
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Repeated turnovers keep sex chromosomes young in willows.反复的染色体倒位使柳树的性染色体保持年轻。
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The chloroplast genome of and characterization of chloroplast regulatory elements.叶绿体基因组以及叶绿体调控元件的特征
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The phylogeny of Salix revealed by whole genome re-sequencing suggests different sex-determination systems in major groups of the genus.全基因组重测序揭示的柳属系统发育表明该属主要类群的性别决定系统存在差异。
Ann Bot. 2022 Mar 23;129(4):485-498. doi: 10.1093/aob/mcac012.
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