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Draft Genome Sequence of Anammox Bacterium "Candidatus Scalindua brodae," Obtained Using Differential Coverage Binning of Sequencing Data from Two Reactor Enrichments.利用来自两个反应器富集物测序数据的差异覆盖分箱法获得的厌氧氨氧化细菌“Candidatus Scalindua brodae”的基因组序列草图
Genome Announc. 2015 Jan 8;3(1):e01415-14. doi: 10.1128/genomeA.01415-14.
2
Cultivation of planktonic anaerobic ammonium oxidation (anammox) bacteria using membrane bioreactor.采用膜生物反应器培养浮游态厌氧氨氧化（anammox）菌。
Microbes Environ. 2013;28(4):436-43. doi: 10.1264/jsme2.me13077. Epub 2013 Nov 8.
3
How to make a living from anaerobic ammonium oxidation.如何从厌氧氨氧化中获利。
FEMS Microbiol Rev. 2013 May;37(3):428-61. doi: 10.1111/1574-6976.12014. Epub 2013 Jan 21.
4
Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium "Candidatus Jettenia asiatica".复杂群落的宏基因组分析揭示了厌氧氨氧化菌“亚洲亚硝化单胞菌”的代谢蓝图。
Front Microbiol. 2012 Oct 29;3:366. doi: 10.3389/fmicb.2012.00366. eCollection 2012.
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Comparative genomics of two independently enriched "candidatus kuenenia stuttgartiensis" anammox bacteria.两种独立富集的“斯图加特库氏菌”厌氧氨氧化细菌的比较基因组学
Front Microbiol. 2012 Aug 21;3:307. doi: 10.3389/fmicb.2012.00307. eCollection 2012.
6
Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1.厌氧氨氧化菌 KSU-1 表达一种 NirK 型含铜亚硝酸盐还原酶，而不是具有细胞色素 cd1 的 NirS 型。
FEBS Lett. 2012 Jun 4;586(11):1658-63. doi: 10.1016/j.febslet.2012.04.041. Epub 2012 May 2.
7
The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium.深海浮霉菌“深泉海杆菌”的宏基因组阐明了这种在全球范围内具有重要氮循环功能的细菌的多功能性。
Environ Microbiol. 2013 May;15(5):1275-89. doi: 10.1111/j.1462-2920.2012.02774.x. Epub 2012 May 9.
8
The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'.“浮霉菌属”中厌氧氨氧化代谢的宏基因组基础。
Biochem Soc Trans. 2011 Dec;39(6):1799-804. doi: 10.1042/BST20110707.
9
Physiological characteristics of the anaerobic ammonium-oxidizing bacterium 'Candidatus Brocadia sinica'.“中国台湾假单胞菌”的厌氧氨氧化菌的生理特性。
Microbiology (Reading). 2011 Jun;157(Pt 6):1706-1713. doi: 10.1099/mic.0.048595-0. Epub 2011 Apr 7.
10
Development of high-rate anaerobic ammonium-oxidizing (anammox) biofilm reactors.高速厌氧氨氧化（anammox）生物膜反应器的开发。
Water Res. 2007 Apr;41(8):1623-34. doi: 10.1016/j.watres.2007.01.050. Epub 2007 Mar 12.

厌氧氨氧化细菌“中华andidatus布罗卡德氏菌”的基因组序列草图

Draft Genome Sequence of an Anaerobic Ammonium-Oxidizing Bacterium, "Candidatus Brocadia sinica".

作者信息

Oshiki Mamoru, Shinyako-Hata Kaori, Satoh Hisashi, Okabe Satoshi

机构信息

Department of Civil Engineering, Nagaoka National College of Technology, Nagaoka, Niigata, Japan.

Faculty of Engineering, Division of Environmental Engineering, Hokkaido University, Sapporo, Hokkaido, Japan.

出版信息

Genome Announc. 2015 Apr 16;3(2):e00267-15. doi: 10.1128/genomeA.00267-15.

DOI:10.1128/genomeA.00267-15
PMID:25883286
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4400429/
Abstract

A draft genome sequence of an anaerobic ammonium-oxidizing (anammox) bacterium, "Candidatus Brocadia sinica," was determined by pyrosequencing and by screening a fosmid library. A 4.07-Mb genome sequence comprising 3 contigs was assembled, in which 3,912 gene-coding regions, 47 tRNAs, and a single rrn operon were annotated.

摘要

通过焦磷酸测序和筛选fosmid文库，测定了厌氧氨氧化细菌“中华andidatus Brocadia”的基因组序列草图。组装得到了一个由3个重叠群组成的4.07 Mb基因组序列，其中注释了3912个基因编码区、47个tRNA和一个rrn操纵子。