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新型海洋厌氧氨氧化细菌“Scalindua sp.”的基因组序列草图

Draft Genome Sequence of a Novel Marine Anaerobic Ammonium-Oxidizing Bacterium, " Scalindua sp.".

作者信息

Ali Muhammad, Shaw Dario Rangel, Saikaly Pascal E

机构信息

Biological and Environmental Science and Engineering Division, Water Desalination and Reuse Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Biological and Environmental Science and Engineering Division, Water Desalination and Reuse Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia

出版信息

Microbiol Resour Announc. 2019 May 16;8(20):e00297-19. doi: 10.1128/MRA.00297-19.

DOI:10.1128/MRA.00297-19
PMID:31097503
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6522788/
Abstract

A novel anaerobic ammonium-oxidizing (anammox) bacterium was detected in an upflow column reactor treating synthetic nitrogen-rich saline solution. Here, we assembled a 4.59-Mb draft genome sequence of this bacterium, identified as a member of the genus " Scalindua," that has 84% nucleotide-level genomic similarity with the closest related anammox bacterium (" Scalindua rubra").

摘要

在一个处理合成富氮盐溶液的上流式柱式反应器中检测到一种新型厌氧氨氧化细菌。在此,我们组装了该细菌459万个碱基对的基因组草图序列,该细菌被鉴定为“Scalindua”属的成员,与最接近的相关厌氧氨氧化细菌(“Scalindua rubra”)具有84%的核苷酸水平基因组相似性。

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本文引用的文献

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Is anammox a promising treatment process for nitrogen removal from nitrogen-rich saline wastewater?厌氧氨氧化工艺是从富氮含盐废水中去除氮的一种有前途的处理工艺吗?
Bioresour Technol. 2018 Dec;270:722-731. doi: 10.1016/j.biortech.2018.08.115. Epub 2018 Aug 30.
2
Anammox-based technologies for nitrogen removal: Advances in process start-up and remaining issues.基于厌氧氨氧化的脱氮技术:工艺启动进展与遗留问题
Chemosphere. 2015 Dec;141:144-53. doi: 10.1016/j.chemosphere.2015.06.094. Epub 2015 Jul 17.
3
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM:评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
4
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Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
5
Full-scale partial nitritation/anammox experiences--an application survey.全规模短程硝化/厌氧氨氧化实践——应用调查。
Water Res. 2014 May 15;55:292-303. doi: 10.1016/j.watres.2014.02.032. Epub 2014 Feb 25.
6
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.SINA:核糖体 RNA 基因的准确高通量多位点序列比对。
Bioinformatics. 2012 Jul 15;28(14):1823-9. doi: 10.1093/bioinformatics/bts252. Epub 2012 May 3.
7
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
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9
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