• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

兰萨罗特拉克汉逊酵母CBS 12615T的基因组草图序列,一种从葡萄中分离出的子囊菌酵母

Draft Genome Sequence of Lachancea lanzarotensis CBS 12615T, an Ascomycetous Yeast Isolated from Grapes.

作者信息

Sarilar Véronique, Devillers Hugo, Freel Kelle C, Schacherer Joseph, Neuvéglise Cécile

机构信息

CNRS, Department of Genetics, Genomics and Microbiology, University of Strasbourg, UMR7156, Strasbourg, France.

出版信息

Genome Announc. 2015 Apr 16;3(2):e00292-15. doi: 10.1128/genomeA.00292-15.

DOI:10.1128/genomeA.00292-15
PMID:25883293
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4400436/
Abstract

We report the genome sequencing of the yeast Lachancea lanzarotensis CBS 12615(T). The assembly comprises 24 scaffolds, for a total size of 11.46 Mbp. The annotation revealed 5,058 putative protein-coding genes. Detection of seven centromeres supports a chromosome fusion, which occurred after divergence from Lachancea thermotolerans and Lachancea kluyveri.

摘要

我们报道了兰萨罗特拉克汉氏酵母CBS 12615(T)的基因组测序结果。该组装包含24个支架,总大小为11.46兆碱基对。注释显示有5058个推定的蛋白质编码基因。七个着丝粒的检测支持了一次染色体融合事件,该事件发生在与耐热拉克汉氏酵母和克鲁维拉克汉氏酵母分化之后。

相似文献

1
Draft Genome Sequence of Lachancea lanzarotensis CBS 12615T, an Ascomycetous Yeast Isolated from Grapes.兰萨罗特拉克汉逊酵母CBS 12615T的基因组草图序列,一种从葡萄中分离出的子囊菌酵母
Genome Announc. 2015 Apr 16;3(2):e00292-15. doi: 10.1128/genomeA.00292-15.
2
Lachancea lanzarotensis sp. nov., an ascomycetous yeast isolated from grapes and wine fermentation in Lanzarote, Canary Islands.拉恰诺酒酵母(Lachancea lanzarotensis)sp. nov.,一种从加那利群岛兰萨罗特岛葡萄和葡萄酒发酵中分离得到的子囊菌酵母。
Int J Syst Evol Microbiol. 2013 Jan;63(Pt 1):358-363. doi: 10.1099/ijs.0.046029-0. Epub 2012 Nov 2.
3
Investigating the biochemical and fermentation attributes of Lachancea species and strains: Deciphering the potential contribution to wine chemical composition.研究拉曼恰酵母属(Lachancea)种和菌株的生化和发酵特性:解析其对葡萄酒化学成分的潜在贡献。
Int J Food Microbiol. 2019 Feb 2;290:273-287. doi: 10.1016/j.ijfoodmicro.2018.10.025. Epub 2018 Nov 2.
4
Population genomic analysis reveals highly conserved mitochondrial genomes in the yeast species Lachancea thermotolerans.群体基因组分析揭示了耐热拉赫酵母(Lachancea thermotolerans)物种中高度保守的线粒体基因组。
Genome Biol Evol. 2014 Sep 11;6(10):2586-94. doi: 10.1093/gbe/evu203.
5
Production of Sophorolipid from an Identified Current Yeast, Lachancea thermotolerans BBMCZ7FA20, Isolated from Honey Bee.从一种已鉴定的当前酵母嗜热有孢汉逊酵母BBMCZ7FA20生产槐糖脂,该酵母从蜜蜂中分离得到。
Curr Microbiol. 2015 Aug;71(2):303-10. doi: 10.1007/s00284-015-0841-7. Epub 2015 Jun 6.
6
Lachancea mirantina sp. nov., an ascomycetous yeast isolated from the cachaca fermentation process.拉恰诺酵母新种,一种从甘蔗酒发酵过程中分离得到的子囊菌酵母。
Int J Syst Evol Microbiol. 2011 Apr;61(Pt 4):989-992. doi: 10.1099/ijs.0.020008-0. Epub 2010 Apr 30.
7
Draft Genome Sequence of Sporidiobolus salmonicolor CBS 6832, a Red-Pigmented Basidiomycetous Yeast.红色色素担子菌酵母——鲑色掷孢酵母CBS 6832的基因组序列草图
Genome Announc. 2015 May 21;3(3):e00444-15. doi: 10.1128/genomeA.00444-15.
8
Draft Genome Sequence of Rhodosporidium toruloides CECT1137, an Oleaginous Yeast of Biotechnological Interest.生物技术领域具有重要意义的产油酵母——圆红冬孢酵母CECT1137的基因组序列草图
Genome Announc. 2014 Jul 10;2(4):e00641-14. doi: 10.1128/genomeA.00641-14.
9
Lachancea dasiensis sp. nov., an ascosporogenous yeast isolated from soil and leaves in Taiwan.新种达氏拉汉酵母菌,一种从台湾土壤和树叶中分离出的产囊孢子酵母。
Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1818-22. doi: 10.1099/ijs.0.008789-0. Epub 2009 Jun 19.
10
Draft Genome Sequence of the Candida zemplinina (syn., Starmerella bacillaris) Type Strain CBS 9494 [corrected].季也蒙毕赤酵母(同义词:芽孢斯塔默酵母)模式菌株CBS 9494的基因组序列草图[校正版]
Microbiol Resour Announc. 2018 Jul 26;7(3). doi: 10.1128/MRA.00872-18. eCollection 2018 Jul.

引用本文的文献

1
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts.基因组因素塑造了子囊菌酵母中碳和氮代谢生态位宽度。
Science. 2024 Apr 26;384(6694):eadj4503. doi: 10.1126/science.adj4503.
2
The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family.酵母交配型转换内切酶 HO 是一种非传统归巢遗传元件家族的驯化成员。
Elife. 2020 Apr 27;9:e55336. doi: 10.7554/eLife.55336.
3
Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution.出芽酵母进化过程中交配型转换的多次创新。
Curr Biol. 2019 Aug 5;29(15):2555-2562.e8. doi: 10.1016/j.cub.2019.06.056. Epub 2019 Jul 25.
4
sppIDer: A Species Identification Tool to Investigate Hybrid Genomes with High-Throughput Sequencing.sppIDer:一种物种鉴定工具,用于研究高通量测序的杂交基因组。
Mol Biol Evol. 2018 Nov 1;35(11):2835-2849. doi: 10.1093/molbev/msy166.
5
Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution.在进化过程中,代谢瓶颈基因的重复顺式调控调节。
Mol Biol Evol. 2018 Aug 1;35(8):1968-1981. doi: 10.1093/molbev/msy102.
6
Copy Number Variation in Fungi and Its Implications for Wine Yeast Genetic Diversity and Adaptation.真菌中的拷贝数变异及其对葡萄酒酵母遗传多样性和适应性的影响。
Front Microbiol. 2018 Feb 22;9:288. doi: 10.3389/fmicb.2018.00288. eCollection 2018.
7
Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina).芽殖酵母(子囊菌纲)的基因组多样性与进化
Genetics. 2017 Jun;206(2):717-750. doi: 10.1534/genetics.116.199216.
8
Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.重建祖先染色体结构和基因库揭示了模式酵母属中基因组进化的原理。
Genome Res. 2016 Jul;26(7):918-32. doi: 10.1101/gr.204420.116. Epub 2016 May 31.
9
Whole-Genome Sequencing and Intraspecific Analysis of the Yeast Species Lachancea quebecensis.魁北克拉氏酵母的全基因组测序及种内分析
Genome Biol Evol. 2016 Jan 5;8(3):733-41. doi: 10.1093/gbe/evv262.
10
Genomics and the making of yeast biodiversity.基因组学与酵母生物多样性的形成
Curr Opin Genet Dev. 2015 Dec;35:100-9. doi: 10.1016/j.gde.2015.10.008. Epub 2015 Nov 30.

本文引用的文献

1
Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae.酵母科中hAT DNA转座子家族的进化动态
Genome Biol Evol. 2014 Dec 21;7(1):172-90. doi: 10.1093/gbe/evu273.
2
Informed and automated k-mer size selection for genome assembly.基于信息和自动化的基因组组装的 k-mer 大小选择。
Bioinformatics. 2014 Jan 1;30(1):31-7. doi: 10.1093/bioinformatics/btt310. Epub 2013 Jun 3.
3
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2:一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
4
Lachancea lanzarotensis sp. nov., an ascomycetous yeast isolated from grapes and wine fermentation in Lanzarote, Canary Islands.拉恰诺酒酵母(Lachancea lanzarotensis)sp. nov.,一种从加那利群岛兰萨罗特岛葡萄和葡萄酒发酵中分离得到的子囊菌酵母。
Int J Syst Evol Microbiol. 2013 Jan;63(Pt 1):358-363. doi: 10.1099/ijs.0.046029-0. Epub 2012 Nov 2.
5
Comparative genomics of protoploid Saccharomycetaceae.原倍体酵母科的比较基因组学。
Genome Res. 2009 Oct;19(10):1696-709. doi: 10.1101/gr.091546.109. Epub 2009 Jun 12.
6
MEME SUITE: tools for motif discovery and searching.MEME套件:用于基序发现和搜索的工具。
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. doi: 10.1093/nar/gkp335. Epub 2009 May 20.
7
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE:用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.