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对六种蚕蛾丝腺的比较转录组分析揭示了丝结构和颜色的遗传基础。

Comparative transcriptome analyses on silk glands of six silkmoths imply the genetic basis of silk structure and coloration.

作者信息

Dong Yang, Dai Fangyin, Ren Yandong, Liu Hui, Chen Lei, Yang Pengcheng, Liu Yanqun, Li Xin, Wang Wen, Xiang Hui

机构信息

Kunming University of Science and Technology, 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 32 East Jiaochang Road, Kunming, Yunnan Province, 650223, China.

出版信息

BMC Genomics. 2015 Mar 17;16(1):203. doi: 10.1186/s12864-015-1420-9.

Abstract

BACKGROUND

Silk has numerous unique properties that make it a staple of textile manufacturing for several thousand years. However, wider applications of silk in modern have been stalled due to limitations of traditional silk produced by Bombyx mori. While silk is commonly produced by B. mori, several wild non-mulberry silkmoths--especially members of family Saturniidae--produce silk with superior properties that may be useful for wider applications. Further utilization of such silks is hampered by the non-domestication status or limited culturing population of wild silkworms. To date there is insufficient basic genomic or transcriptomic data on these organisms or their silk production.

RESULTS

We sequenced and compared the transcriptomes of silk glands of six Saturniidae wild silkmoth species through next-generation sequencing technology, identifying 37758 ~ 51734 silkmoth unigenes, at least 36.3% of which are annotated with an e-value less than 10(-5). Sequence analyses of these unigenes identified a batch of genes specific to Saturniidae that are enriched in growth and development. Analyses of silk proteins including fibroin and sericin indicate intra-genus conservation and inter-genus diversification of silk protein features among the wild silkmoths, e.g., isoelectric points, hydrophilicity profile and amino acid composition in motifs of silk H-fibroin. Interestingly, we identified p25 in two of the silkmoths, which were previously predicted to be absent in Saturniidae. There are rapid evolutionary changes in sericin proteins, which might account for the highly heterogeneity of sericin in Saturniidae silkmoths. Within the six sikmoths, both colored-cocoon silkmoth specific transcripts and differentially expressed genes between the colored-cocoon and non-colored-cocoon silkmoths are significantly enriched in catalytic activity, especially transferase activity, suggesting potentially viable targets for future gene mining or genetic manipulation.

CONCLUSIONS

Our results characterize novel and potentially valuable gene resources of saturniid silkmoths that may facilitate future genetic improvement and modification of mulberry silkworms. Our results suggest that the disparate features of silk--coloration, retention, strength, etc. --are likely not only due to silk proteins, but also to the environment of silk assembly, and more specifically, that stable silk coloration exhibited by some Saturniidae silkmoths may be attributable to active catalytic progress in pigmentation.

摘要

背景

丝绸具有众多独特特性,使其数千年来一直是纺织制造业的主要原料。然而,由于家蚕所产传统丝绸的局限性,丝绸在现代的更广泛应用一直停滞不前。虽然丝绸通常由家蚕生产,但几种野生非桑蚕蛾——尤其是天蚕蛾科成员——所产丝绸具有更优异的特性,可能有助于更广泛的应用。此类丝绸的进一步利用受到野生蚕未驯化状态或养殖数量有限的阻碍。迄今为止,关于这些生物及其丝绸生产的基础基因组或转录组数据不足。

结果

我们通过下一代测序技术对六种天蚕蛾科野生蚕蛾的丝腺转录组进行了测序和比较,鉴定出37758至51734个蚕蛾单基因,其中至少36.3%的基因注释的e值小于10^(-5)。对这些单基因的序列分析鉴定出一批天蚕蛾科特有的基因,这些基因在生长和发育过程中富集。对包括丝素蛋白和丝胶蛋白在内的丝蛋白的分析表明,野生蚕蛾中丝蛋白特征在属内具有保守性,在属间具有多样性,例如丝H-丝素蛋白基序中的等电点、亲水性分布和氨基酸组成。有趣的是,我们在其中两种蚕蛾中鉴定出了p25,此前预测天蚕蛾科中不存在该蛋白。丝胶蛋白存在快速的进化变化,这可能解释了天蚕蛾科蚕蛾丝胶蛋白的高度异质性。在这六种蚕蛾中,有色茧蚕蛾的特异性转录本以及有色茧和无色茧蚕蛾之间的差异表达基因在催化活性方面均显著富集,尤其是转移酶活性,这表明它们可能是未来基因挖掘或基因操作的潜在可行靶点。

结论

我们的研究结果表征了天蚕蛾科新的且具有潜在价值的基因资源,这可能有助于未来对家蚕进行遗传改良和修饰。我们的研究结果表明,丝绸在颜色、韧性、强度等方面的不同特性可能不仅归因于丝蛋白,还归因于丝蛋白组装的环境,更具体地说,一些天蚕蛾科蚕蛾所呈现的稳定丝绸颜色可能归因于色素沉着过程中的活性催化作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a610/4372302/32fced1f2c37/12864_2015_1420_Fig1_HTML.jpg

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